ArticleNature genetics2014
Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species.
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Article in Nature genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 504 papers.
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504 citing papers in PubMed, 1,059 citations in OpenAlex.
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444 more citing papers are in PubMed but not listed here.
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Authors and funding
71 authors at 16 institutions in 3 countries.
Seungill Kim1] Department of Plant Science, Seoul National University, Seoul, Korea. [2].
Minkyu Park1] Department of Plant Science, Seoul National University, Seoul, Korea. [2] Plant Genomics and Breeding Institute, Seoul National University, Seoul, Korea. [3].
Seon-In Yeom1] Department of Plant Science, Seoul National University, Seoul, Korea. [2] Plant Genomics and Breeding Institute, Seoul National University, Seoul, Korea. [3].
Yong-Min Kim1] Department of Plant Science, Seoul National University, Seoul, Korea. [2] Plant Genomics and Breeding Institute, Seoul National University, Seoul, Korea. [3].
Je Min Lee1] Department of Plant Science, Seoul National University, Seoul, Korea. [2] Plant Genomics and Breeding Institute, Seoul National University, Seoul, Korea. [3].
Hyun-Ah Lee1] Department of Plant Science, Seoul National University, Seoul, Korea. [2].
Eunyoung Seo1] Department of Plant Science, Seoul National University, Seoul, Korea. [2].
Jaeyoung ChoiDepartment of Agricultural Biotechnology, Seoul National University, Seoul, Korea.
Kyeongchae CheongDepartment of Agricultural Biotechnology, Seoul National University, Seoul, Korea.
Ki-Tae KimDepartment of Agricultural Biotechnology, Seoul National University, Seoul, Korea.
Kyongyong JungDepartment of Agricultural Biotechnology, Seoul National University, Seoul, Korea.
Gir-Won LeeDepartment of Bioinformatics and Life Science, Soongsil University, Seoul, Korea.
Sang-Keun Oh1] Department of Plant Science, Seoul National University, Seoul, Korea. [2] Plant Genomics and Breeding Institute, Seoul National University, Seoul, Korea.
Chungyun BaeDepartment of Plant Science, Seoul National University, Seoul, Korea.
Saet-Byul KimDepartment of Plant Science, Seoul National University, Seoul, Korea.
Hye-Young LeeDepartment of Plant Science, Seoul National University, Seoul, Korea.
Shin-Young KimDepartment of Plant Science, Seoul National University, Seoul, Korea.
Myung-Shin KimDepartment of Plant Science, Seoul National University, Seoul, Korea.
Byoung-Cheorl Kang1] Department of Plant Science, Seoul National University, Seoul, Korea. [2] Plant Genomics and Breeding Institute, Seoul National University, Seoul, Korea. [3] Vegetable Breeding Research Center, Seoul National University, Seoul, Korea.
Yeong Deuk JoDepartment of Plant Science, Seoul National University, Seoul, Korea.
Hee-Bum YangDepartment of Plant Science, Seoul National University, Seoul, Korea.
Hee-Jin JeongDepartment of Plant Science, Seoul National University, Seoul, Korea.
Won-Hee KangDepartment of Plant Science, Seoul National University, Seoul, Korea.
Jin-Kyung KwonVegetable Breeding Research Center, Seoul National University, Seoul, Korea.
Chanseok ShinDepartment of Agricultural Biotechnology, Seoul National University, Seoul, Korea.
Jae Yun LimDepartment of Agricultural Biotechnology, Seoul National University, Seoul, Korea.
June Hyun ParkDepartment of Agricultural Biotechnology, Seoul National University, Seoul, Korea.
Jin Hoe HuhDepartment of Plant Science, Seoul National University, Seoul, Korea.
June-Sik KimDepartment of Plant Science, Seoul National University, Seoul, Korea.
Byung-Dong KimDepartment of Plant Science, Seoul National University, Seoul, Korea.
Oded CohenAgricultural Research Organization, Institute of Plant Science, Volcani Center, Bet Dagan, Israel.
Ilan ParanAgricultural Research Organization, Institute of Plant Science, Volcani Center, Bet Dagan, Israel.
Mi Chung SuhDepartment of Bioenergy Science and Technology, Chonnam National University, Gwangju, Korea.
Saet Buyl LeeDepartment of Bioenergy Science and Technology, Chonnam National University, Gwangju, Korea.
Yeon-Ki KimGenomics Genetics Institute, GreenGene BioTech, Inc., Yongin, Korea.
Younhee ShinCodes Division, Insilicogen, Inc., Suwon, Korea.
Seung-Jae NohCodes Division, Insilicogen, Inc., Suwon, Korea.
Junhyung ParkCodes Division, Insilicogen, Inc., Suwon, Korea.
Young Sam SeoGinseng Resources Research Laboratory, Korea Ginseng Corporation, Daejeon, Korea.
Suk-Yoon KwonKorea Research Institute of Bioscience and Biotechnology, Daejeon, Korea.
Hyun A KimKorea Research Institute of Bioscience and Biotechnology, Daejeon, Korea.
Jeong Mee ParkKorea Research Institute of Bioscience and Biotechnology, Daejeon, Korea.
Hyun-Jin KimKorea Research Institute of Bioscience and Biotechnology, Daejeon, Korea.
Sang-Bong ChoiDivision of Bioscience and Bioinformatics, Myongji University, Yongin, Korea.
Paul W Bosland1] Department of Plant and Environmental Sciences, New Mexico State University, Las Cruces, New Mexico, USA. [2] Chile Pepper Institute, New Mexico State University, Las Cruces, New Mexico, USA.
Gregory ReevesDepartment of Plant and Environmental Sciences, New Mexico State University, Las Cruces, New Mexico, USA.
Sung-Hwan JoSeeders, Inc., Daejeon, Korea.
Bong-Woo LeeSeeders, Inc., Daejeon, Korea.
Hyung-Taeg ChoDepartment of Biological Sciences, Seoul National University, Seoul, Korea.
Hee-Seung ChoiDepartment of Biological Sciences, Seoul National University, Seoul, Korea.
Min-Soo LeeDepartment of Biological Sciences, Seoul National University, Seoul, Korea.
Yeisoo YuArizona Genomics Institute, University of Arizona, Tucson, Arizona, USA.
Yang Do ChoiDepartment of Agricultural Biotechnology, Seoul National University, Seoul, Korea.
Beom-Seok ParkAgricultural Genome Center, National Academy of Agricultural Science, Rural Development Administration, Suwon, Korea.
Allen van DeynzeSeed Biotechnology Center, University of California, Davis, Davis, California, USA.
Hamid AshrafiSeed Biotechnology Center, University of California, Davis, Davis, California, USA.
Theresa HillSeed Biotechnology Center, University of California, Davis, Davis, California, USA.
Woo Taek KimDepartment of Systems Biology, Yonsei University, Seoul, Korea.
Hyun-Sook PaiDepartment of Systems Biology, Yonsei University, Seoul, Korea.
Hee Kyung AhnDepartment of Systems Biology, Yonsei University, Seoul, Korea.
Inhwa YeamDepartment of Horticulture and Breeding, Andong National University, Andong, Korea.
James J Giovannoni1] US Department of Agriculture-Agricultural Research Service, Robert W. Holley Center, Ithaca, New York, USA. [2] Boyce Thompson Institute for Plant Research, Cornell University, Ithaca, New York, USA.
Jocelyn K C RoseDepartment of Plant Biology, Cornell University, Ithaca, New York, USA.
Iben SørensenDepartment of Plant Biology, Cornell University, Ithaca, New York, USA.
Sang-Jik LeeBiotechnology Institute, Nongwoo Bio, Yeoju, Korea.
Ryan W KimGenome Center, University of California, Davis, Davis, California, USA.
Ik-Young ChoiNational Instrumentation Center for Environmental Management, Seoul National University, Seoul, Korea.
Beom-Soon ChoiNational Instrumentation Center for Environmental Management, Seoul National University, Seoul, Korea.
Jong-Sung LimNational Instrumentation Center for Environmental Management, Seoul National University, Seoul, Korea.
Yong-Hwan LeeDepartment of Agricultural Biotechnology, Seoul National University, Seoul, Korea.
Doil Choi1] Department of Plant Science, Seoul National University, Seoul, Korea. [2] Plant Genomics and Breeding Institute, Seoul National University, Seoul, Korea.
Seoul National University · KRKorea Research Institute of Bioscience and Biotechnology · KRUniversity of California, Davis · USChonnam National University · KRInsilicogen (South Korea) · KRYonsei University · KRAgricultural Research Organization · ILCornell University · USNew Mexico State University · USSeeders (South Korea) · KRAndong National University · KRMyongji University · KRNational Academy of Agricultural Science · KRRobert W. Holley Center for Agriculture & Health · USSoongsil University · KRUniversity of Arizona · US
Funding
No grant is acknowledged in the PubMed record.
Abstract
Hot pepper (Capsicum annuum), one of the oldest domesticated crops in the Americas, is the most widely grown spice crop in the world. We report whole-genome sequencing and assembly of the hot pepper (Mexican landrace of Capsicum annuum cv. CM334) at 186.6× coverage. We also report resequencing of two cultivated peppers and de novo sequencing of the wild species Capsicum chinense. The genome size of the hot pepper was approximately fourfold larger than that of its close relative tomato, and the genome showed an accumulation of Gypsy and Caulimoviridae family elements. Integrative genomic and transcriptomic analyses suggested that change in gene expression and neofunctionalization of capsaicin synthase have shaped capsaicinoid biosynthesis. We found differential molecular patterns of ripening regulators and ethylene synthesis in hot pepper and tomato. The reference genome will serve as a platform for improving the nutritional and medicinal values of Capsicum species.
Indexed as
Genome, PlantCapsaicinCapsicumEvolution, MolecularGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantGenetic VariationGenome SizeMetabolic Networks and PathwaysMolecular Sequence DataMultigene FamilyRNA, PlantSolanum lycopersicumSpecies SpecificityCapsaicinRNA, Plant
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