Evidence map›Paper›PMID 24441423›Full record

ArticleAutophagy2014

Autophagy is essential for cardiac morphogenesis during vertebrate development.

Eunmyong Lee, Yeon Koo, Aylwin Ng, Yongjie Wei, Kate Luby-Phelps, Amy Juraszek, Ramnik J Xavier, Ondine Cleaver, Beth Levine, James F Amatruda

Open access · bronzeAbstract read
In one paragraph

Article in Autophagy, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed, 3 pooled it
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 3 syntheses or guidelines pooled it, 137 citations in OpenAlex.

  1. Pooled it
  2. Guideline
  3. Guideline
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. The molecular mechanisms of cardiac development and related diseases.Signal transduction and targeted therapy · 2024
    Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Regulatory effects of trimetazidine in cardiac ischemia/reperfusion injury.Naunyn-Schmiedeberg's archives of pharmacology · 2023
    Review
  19. The ProbioticAnimals : an open access journal from MDPI · 2023
    Article
  20. Article

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Eunmyong LeeDepartment of Internal Medicine; University of Texas Southwestern Medical Center; Dallas, TX USA.
Yeon KooDepartment of Molecular Biology; University of Texas Southwestern Medical Center; Dallas, TX USA.
Aylwin NgCenter for Computational & Integrative Biology; Massachusetts General Hospital; Boston, MA USA; Gastrointestinal Unit; Massachusetts General Hospital; Boston, MA USA; Broad Institute of Harvard and MIT; Cambridge, MA USA.
Yongjie WeiDepartment of Internal Medicine; University of Texas Southwestern Medical Center; Dallas, TX USA; Center for Autophagy Research; University of Texas Southwestern Medical Center; Dallas, TX USA; Howard Hughes Medical Institute; University of Texas Southwestern Medical Center; Dallas, TX USA.
Kate Luby-PhelpsDepartment of Cell Biology; UT Southwestern Medical Center; Dallas, TX USA.
Amy JuraszekDepartment of Pediatrics; University of Texas Southwestern Medical Center; Dallas, TX USA.
Ramnik J XavierCenter for Computational & Integrative Biology; Massachusetts General Hospital; Boston, MA USA; Gastrointestinal Unit; Massachusetts General Hospital; Boston, MA USA; Broad Institute of Harvard and MIT; Cambridge, MA USA.
Ondine CleaverDepartment of Molecular Biology; University of Texas Southwestern Medical Center; Dallas, TX USA.
Beth LevineDepartment of Internal Medicine; University of Texas Southwestern Medical Center; Dallas, TX USA; Center for Autophagy Research; University of Texas Southwestern Medical Center; Dallas, TX USA; Howard Hughes Medical Institute; University of Texas Southwestern Medical Center; Dallas, TX USA; Department of Microbiology; University of Texas Southwestern Medical Center; Dallas, TX USA.
James F AmatrudaDepartment of Internal Medicine; University of Texas Southwestern Medical Center; Dallas, TX USA; Department of Molecular Biology; University of Texas Southwestern Medical Center; Dallas, TX USA; Department of Pediatrics; University of Texas Southwestern Medical Center; Dallas, TX USA.
Southwestern Medical CenterHarvard University · USThe University of Texas Southwestern Medical Center · USSouthwestern Medical Center · US

Funding

Beclin 1-Bcl-2 Interactions: Effects on AutophagyR01CA109618 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI LEVINE, BETH C · 2004 to 2014
$3.1M
Blood vessel tubulogenesis: Rasip1-directed GTPase signaling and cell polarity.R01HL113498 · NHLBI · UT SOUTHWESTERN MEDICAL CENTER · PI CLEAVER, ONDINE B · 2012 to 2015
$1.7M
Generation and Rapid Mapping of Low-Penetrance Disease Alleles in ZebrafishR01CA135731 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI AMATRUDA, JAMES F · 2008 to 2012
$1.6M
NCI NIH HHS 5R01CA135731NCI NIH HHS R01 CA109618NCI NIH HHS R01CA109618NCI NIH HHS R01 CA135731NHLBI NIH HHS R01 HL113498
6 · The paper itself

Abstract

Genetic analyses indicate that autophagy, an evolutionarily conserved lysosomal degradation pathway, is essential for eukaryotic differentiation and development. However, little is known about whether autophagy contributes to morphogenesis during embryogenesis. To address this question, we examined the role of autophagy in the early development of zebrafish, a model organism for studying vertebrate tissue and organ morphogenesis. Using zebrafish that transgenically express the fluorescent autophagy reporter protein, GFP-LC3, we found that autophagy is active in multiple tissues, including the heart, during the embryonic period. Inhibition of autophagy by morpholino knockdown of essential autophagy genes (including atg5, atg7, and becn1) resulted in defects in morphogenesis, increased numbers of dead cells, abnormal heart structure, and reduced organismal survival. Further analyses of cardiac development in autophagy-deficient zebrafish revealed defects in cardiac looping, abnormal chamber morphology, aberrant valve development, and ectopic expression of critical transcription factors including foxn4, tbx5, and tbx2. Consistent with these results, Atg5-deficient mice displayed abnormal Tbx2 expression and defects in valve development and chamber septation. Thus, autophagy plays an essential, conserved role in cardiac morphogenesis during vertebrate development.

Indexed as

AnimalsAutophagyAutophagy-Related Protein 5Cell DifferentiationGene Expression Regulation, DevelopmentalHeartMiceMicrotubule-Associated ProteinsMorphogenesisZebrafishZebrafish ProteinsAtg5 protein, mouseAutophagy-Related Protein 5Microtubule-Associated ProteinsZebrafish Proteinsatg5atg7autophagybecn1heart developmenttbx2zebrafish

Identifiers

PMID24441423
PMCPMC4091146
OpenAlexW1980192302

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.