Evidence map›Paper›PMID 24440637›Full record

ReviewBiochimie2014

Mitochondrial RNA editing in trypanosomes: small RNAs in control.

Ruslan Aphasizhev, Inna Aphasizheva

Open access · greenAbstract readReview
In one paragraph

Review in Biochimie, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Mitochondrial DNA Structure inPathogens (Basel, Switzerland) · 2025
    Review
  5. Pathogens (Basel, Switzerland) · 2025
    Review
  6. Article
  7. Article
  8. Translation in Mitochondrial Ribosomes.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  9. Review
  10. Article
  11. Mitochondrial RNA editing inComputational and structural biotechnology journal · 2022
    Article
  12. Development of VariousMicroorganisms · 2021
    Article
  13. Article
  14. The Complete Mitochondrial DNA ofFrontiers in cellular and infection microbiology · 2021
    Article
  15. Genes · 2020
    Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Ruslan AphasizhevDepartment of Molecular and Cell Biology, Boston University School of Dental Medicine, 72 East Concord Street, Evans 4th Floor, E426, Boston, MA 02118, USA. Electronic address: ruslana@bu.edu.
Inna AphasizhevaDepartment of Molecular and Cell Biology, Boston University School of Dental Medicine, 72 East Concord Street, Evans 4th Floor, E426, Boston, MA 02118, USA.
Boston University · US

Funding

Guide RNA Binding ComplexR01AI101057 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI Ruslan Afasizhev · 2012 to 2026
$6.0M
Structures and Functions of RNA Editing TUTasesR01AI091914 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI AFASIZHEV, RUSLAN · 2011 to 2020
$4.4M
NIAID NIH HHS R01 AI091914NIAID NIH HHS R01AI091914NIAID NIH HHS R01 AI101057NIAID NIH HHS R01AI101057
6 · The paper itself

Abstract

Mitochondrial mRNA editing in trypanosomes is a posttranscriptional processing pathway thereby uridine residues (Us) are inserted into, or deleted from, messenger RNA precursors. By correcting frameshifts, introducing start and stop codons, and often adding most of the coding sequence, editing restores open reading frames for mitochondrially-encoded mRNAs. There can be hundreds of editing events in a single pre-mRNA, typically spaced by few nucleotides, with U-insertions outnumbering U-deletions by approximately 10-fold. The mitochondrial genome is composed of ∼50 maxicircles and thousands of minicircles. Catenated maxi- and minicircles are packed into a dense structure called the kinetoplast; maxicircles yield rRNA and mRNA precursors while guide RNAs (gRNAs) are produced predominantly from minicircles, although varying numbers of maxicircle-encoded gRNAs have been identified in kinetoplastids species. Guide RNAs specify positions and the numbers of inserted or deleted Us by hybridizing to pre-mRNA and forming series of mismatches. These 50-60 nucleotide (nt) molecules are 3' uridylated by RET1 TUTase and stabilized via association with the gRNA binding complex (GRBC). Editing reactions of mRNA cleavage, U-insertion or deletion, and ligation are catalyzed by the RNA editing core complex (RECC). To function in mitochondrial translation, pre-mRNAs must further undergo post-editing 3' modification by polyadenylation/uridylation. Recent studies revealed a highly compound nature of mRNA editing and polyadenylation complexes and their interactions with the translational machinery. Here we focus on mechanisms of RNA editing and its functional coupling with pre- and post-editing 3' mRNA modification and gRNA maturation pathways.

Indexed as

Gene Expression RegulationGenome, MitochondrialMitochondriaProtozoan ProteinsRNARNA EditingRNA, Guide, KinetoplastidaRNA, MessengerRNA, MitochondrialRNA NucleotidyltransferasesRNA PrecursorsTrypanosoma brucei bruceiUridineProtozoan ProteinsRNARNA, Guide, KinetoplastidaRNA, MessengerRNA, MitochondrialRNA NucleotidyltransferasesRNA PrecursorsUridineCryptogenesMitochondriaProtein complexesRNA binding proteinsRNA editingRNA ligaseRNase IIITrypanosomaTUTase

Identifiers

PMID24440637
PMCPMC4737708
OpenAlexW2091577013

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.