Evidence map›Paper›PMID 24440517›Full record

ArticleStructure (London, England : 1993)2014

Structure of the DNA-binding and RNA-polymerase-binding region of transcription antitermination factor λQ.

Sergey M Vorobiev, Yocheved Gensler, Hanif Vahedian-Movahed, Jayaraman Seetharaman, Min Su, Janet Y Huang, Rong Xiao, Gregory Kornhaber, Gaetano T Montelione, Liang Tong and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Structural basis of Q-dependent antitermination.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Sergey M VorobievDepartment of Biological Sciences, Northeast Structural Genomics Consortium, Columbia University, New York, NY 10027, USA.
Yocheved GenslerDepartment of Genetics and Waksman Institute, Rutgers University, Piscataway, NJ 08854, USA.
Hanif Vahedian-MovahedDepartment of Chemistry and Waksman Institute, Rutgers University, Piscataway, NJ 08854, USA.
Jayaraman SeetharamanDepartment of Biological Sciences, Northeast Structural Genomics Consortium, Columbia University, New York, NY 10027, USA.
Min SuDepartment of Biological Sciences, Northeast Structural Genomics Consortium, Columbia University, New York, NY 10027, USA.
Janet Y HuangCenter for Advanced Biotechnology and Medicine, Rutgers University, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ 08854, USA; Northeast Structural Genomics Consortium, Rutgers University, Piscataway, NJ 08854, USA.
Rong XiaoCenter for Advanced Biotechnology and Medicine, Rutgers University, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ 08854, USA; Northeast Structural Genomics Consortium, Rutgers University, Piscataway, NJ 08854, USA.
Gregory KornhaberCenter for Advanced Biotechnology and Medicine, Rutgers University, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ 08854, USA; Northeast Structural Genomics Consortium, Rutgers University, Piscataway, NJ 08854, USA.
Gaetano T MontelioneCenter for Advanced Biotechnology and Medicine, Rutgers University, Robert Wood Johnson Medical School, Rutgers University, Piscataway, NJ 08854, USA; Northeast Structural Genomics Consortium, Rutgers University, Piscataway, NJ 08854, USA.
Liang TongDepartment of Biological Sciences, Northeast Structural Genomics Consortium, Columbia University, New York, NY 10027, USA.
Richard H EbrightDepartment of Chemistry and Waksman Institute, Rutgers University, Piscataway, NJ 08854, USA. Electronic address: ebright@waksman.rutgers.edu.
Bryce E NickelsDepartment of Genetics and Waksman Institute, Rutgers University, Piscataway, NJ 08854, USA. Electronic address: bnickels@waksman.rutgers.edu.
Rutgers, The State University of New Jersey · USNew York Structural Biology Center · USColumbia University · US

Funding

University of Georgia ProjectU54GM094597 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI MONTELIONE, GAETANO T · 2010 to 2014
$36.9M
TRANSCRIPTION ACTIVATION BY CAPR01GM041376 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI RICHARD H. EBRIGHT · 1989 to 2026
$6.5M
BACTERIAL TRANSCRIPTION COMPLEXESR37GM041376 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI EBRIGHT, RICHARD H. · 2013 to 2022
$5.0M
In Vivo Studies of Abortive InitiationR01GM088343 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI NICKELS, BRYCE EDWARD · 2011 to 2015
$1.7M
NIGMS NIH HHS GM041376NIGMS NIH HHS GM088343NIGMS NIH HHS R01 GM041376NIGMS NIH HHS R01 GM088343NIGMS NIH HHS R37 GM041376NIGMS NIH HHS U54 GM094597NIGMS NIH HHS U54-GM094597
6 · The paper itself

Abstract

The bacteriophage λ Q protein is a transcription antitermination factor that controls expression of the phage late genes as a stable component of the transcription elongation complex. To join the elongation complex, λQ binds a specific DNA sequence element and interacts with RNA polymerase that is paused during early elongation. λQ binds to the paused early-elongation complex through interactions between λQ and two regions of RNA polymerase: region 4 of the σ(70) subunit and the flap region of the β subunit. We present the 2.1 Å resolution crystal structure of a portion of λQ containing determinants for interaction with DNA, interaction with region 4 of σ(70), and interaction with the β flap. The structure provides a framework for interpreting prior genetic and biochemical analysis and sets the stage for future structural studies to elucidate the mechanism by which λQ alters the functional properties of the transcription elongation complex.

Indexed as

Binding SitesCrystallography, X-RayDNADNA-Directed RNA PolymerasesModels, MolecularProtein ConformationProtein Structure, TertiaryViral ProteinsZincDNADNA-Directed RNA PolymerasesQ protein, Bacteriophage lambdaViral ProteinsZinc

Identifiers

PMID24440517
PMCPMC3951671
OpenAlexW2035849333

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.