Evidence map›Paper›PMID 24440078›Full record

ArticleChemistry & biology2014

Detection of miRNA expression in intact cells using activatable sensor oligonucleotides.

Byunghee Yoo, Amol Kavishwar, Subrata K Ghosh, Natalie Barteneva, Mehmet V Yigit, Anna Moore, Zdravka Medarova

Abstract read
In one paragraph

Article in Chemistry & biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Byunghee YooMGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02129, USA.
Amol KavishwarMGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02129, USA.
Subrata K GhoshMGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02129, USA.
Natalie BartenevaProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Harvard Medical School, 200 Longwood Avenue, D-239, Boston, MA 02115, USA.
Mehmet V YigitMGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02129, USA.
Anna MooreMGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02129, USA. Electronic address: amoore@helix.mgh.harvard.edu.
Zdravka MedarovaMGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital and Harvard Medical School, Boston, MA 02129, USA. Electronic address: zmedarova@partners.org.
Harvard University · USAthinoula A. Martinos Center for Biomedical Imaging · USBoston Children's Hospital · US

Funding

NUCLEAR MAGNETIC RESONANCE RESEARCHT32CA009502 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI MOORE, ANNA · 1985 to 2013
$2.0M
MicroRNA Therapy for Lymph Node Metastatic Breast CancerR01CA163461 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI MEDAROVA, ZDRAVKA O · 2012 to 2016
$1.9M
Target-Specific Imaging and Delivery of siRNA to TumorsR00CA129070 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI MEDAROVA, ZDRAVKA O · 2009 to 2011
$739k
IVIS Spectrum Imaging SystemS10RR025504 · NCRR · MASSACHUSETTS GENERAL HOSPITAL · PI MOORE, ANNA · 2009 to 2009
$341k
NCI NIH HHS 1R01CA163461-01A1NCI NIH HHS CA009502NCI NIH HHS NCIR00CA129070NCI NIH HHS R00 CA129070NCI NIH HHS R01 CA163461NCI NIH HHS T32 CA009502NCRR NIH HHS S10 RR025504
6 · The paper itself

Abstract

We describe a technology for the profiling of miRNA expression in intact cells. The technology is based on sensor oligonucleotides that are cleavable, completely complementary to a target miRNA, and dual-labeled with a fluorescent dye and a quencher. Upon entering the cell, the sensor oligonucleotide binds its specific miRNA target through complementary base-pairing. This triggers assembly of the endogenous RNA Induced Silencing Complex (RISC) around the miRNA-sensor duplex and cleavage of the sensor oligonucleotide, resulting in separation between the dye and quencher, and a fluorescence turn-on. In the presented feasibility studies, we focus on a specific miRNA (miR-10b) implicated in breast cancer metastasis. Using a human breast adenocarcinoma cell line, we illustrate the application of this technology for miRNA detection with nanomolar sensitivity in both a cell-free system and intact cells.

Indexed as

Biosensing TechniquesBase PairingCell-Free SystemCell Line, TumorFlow CytometryFluorescent DyesHumansMicroRNAsMicroscopy, FluorescenceOligonucleotidesRibonucleasesFluorescent DyesMicroRNAsMIRN10 microRNA, humanOligonucleotidesRibonucleases

Identifiers

PMID24440078
PMCPMC3943878
OpenAlexW2028426636

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.