Evidence map›Paper›PMID 24437652›Full record

ArticleThe journal of physical chemistry. B2014

Nuclear hyperfine and quadrupole tensor characterization of the nitrogen hydrogen bond donors to the semiquinone of the QB site in bacterial reaction centers: a combined X- and S-band (14,15)N ESEEM and DFT study.

Alexander T Taguchi, Patrick J O'Malley, Colin A Wraight, Sergei A Dikanov

Open access · bronzeAbstract read
In one paragraph

Article in The journal of physical chemistry. B, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Colin A. Wraight, 1945-2014.Photosynthesis research · 2016
    Article
  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Alexander T TaguchiCenter for Biophysics and Computational Biology, ‡Department of Biochemistry, §Department of Veterinary Clinical Medicine, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States.
Patrick J O'Malley
Colin A Wraight
Sergei A Dikanov
University of Illinois Urbana-Champaign · USUniversity of Veterinary Medicine · HU

Funding

INSTITUTIONAL NRSA IN MOLECULAR BIOPHYSICST32GM008276 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI GROSMAN, CLAUDIO F · 1988 to 2013
$4.8M
Structure of reaction intermediates in the bc1 complexR01GM062954 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI DIKANOV, SERGEI A · 2002 to 2010
$2.2M
PULSED X BAND EPR SPECTROMETER FOR BIOMEDICAL RESEARCHS10RR015878 · NCRR · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI BELFORD, R LINN · 2001 to 2001
$489k
Multifrequency Pulsed Electron Paramagnetic Resonance Spectrometer For BiomedicalS10RR025438 · NCRR · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI DIKANOV, SERGEI A · 2009 to 2009
$397k
NCRR NIH HHS S10 RR025438NCRR NIH HHS S10-RR025438NCRR NIH HHS S10-RR15878NIGMS NIH HHS 5T32-GM008276NIGMS NIH HHS GM062954NIGMS NIH HHS R01 GM062954NIGMS NIH HHS T32 GM008276
6 · The paper itself

Abstract

The secondary quinone anion radical QB(-) (SQB) in reaction centers of Rhodobacter sphaeroides interacts with Nδ of His-L190 and Np (peptide nitrogen) of Gly-L225 involved in hydrogen bonds to the QB carbonyls. In this work, S-band (∼3.6 GHz) ESEEM was used with the aim of obtaining a complete characterization of the nuclear quadrupole interaction (nqi) tensors for both nitrogens by approaching the cancelation condition between the isotropic hyperfine coupling and (14)N Zeeman frequency at lower microwave frequencies than traditional X-band (9.5 GHz). By performing measurements at S-band, we found a dominating contribution of Nδ in the form of a zero-field nqi triplet at 0.55, 0.92, and 1.47 MHz, defining the quadrupole coupling constant K = e(2)qQ/4h = 0.4 MHz and associated asymmetry parameter η = 0.69. Estimates of the hyperfine interaction (hfi) tensors for Nδ and Np were obtained from simulations of 1D and 2D (14,15)N X-band and three-pulse (14)N S-band spectra with all nuclear tensors defined in the SQB g-tensor coordinate system. From simulations, we conclude that the contribution of Np to the S-band spectrum is suppressed by its strong nqi and weak isotropic hfi comparable to the level of hyperfine anisotropy, despite the near-cancelation condition for Np at S-band. The excellent agreement between our EPR simulations and DFT calculations of the nitrogen hfi and nqi tensors to SQB is promising for the future application of powder ESEEM to full tensor characterizations.

Indexed as

Models, MolecularQuantum TheoryBenzoquinonesElectron Spin Resonance SpectroscopyHydrogen BondingMolecular ConformationNitrogenBenzoquinonesNitrogensemiquinone radicals

Identifiers

PMID24437652
PMCPMC3983398
OpenAlexW2064119114

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.