Evidence map›Paper›PMID 24436333›Full record

ArticleThe Journal of biological chemistry2014

Central cavity of fructose-1,6-bisphosphatase and the evolution of AMP/fructose 2,6-bisphosphate synergism in eukaryotic organisms.

Yang Gao, Lu Shen, Richard B Honzatko

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Yang GaoFrom the Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, Iowa 50011.
Lu Shen
Richard B Honzatko

Funding

REGULATORY ENZYMES OF GLYCOLYSIS AND GLUCONEOGENESISR01NS010546 · NINDS · IOWA STATE UNIVERSITY · PI HONZATKO, RICHARD B · 1985 to 2011
$3.6M
Regulatory Enzymes of Glycolysis and GluconeogenesisR56NS010546 · NINDS · IOWA STATE UNIVERSITY · PI FROMM, HERBERT JEROME · 2007 to 2007
$358k
TARGETING OF PROTEINS TO THE NEUROMUSCULAR JUNCTIONF32NS010546 · NINDS · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI KAMMESHEIDT, ANJA · 1997 to 1999
–
NINDS NIH HHS F32 NS010546NINDS NIH HHS NS 10546NINDS NIH HHS R01 NS010546NINDS NIH HHS R56 NS010546
6 · The paper itself

Abstract

The effects of AMP and fructose 2,6-bisphosphate (Fru-2,6-P2) on porcine fructose-1,6-bisphosphatase (pFBPase) and Escherichia coli FBPase (eFBPase) differ in three respects. AMP/Fru-2,6-P2 synergism in pFBPase is absent in eFBPase. Fru-2,6-P2 induces a 13° subunit pair rotation in pFBPase but no rotation in eFBPase. Hydrophilic side chains in eFBPase occupy what otherwise would be a central aqueous cavity observed in pFBPase. Explored here is the linkage of AMP/Fru-2,6-P2 synergism to the central cavity and the evolution of synergism in FBPases. The single mutation Ser(45) → His substantially fills the central cavity of pFBPase, and the triple mutation Ser(45) → His, Thr(46) → Arg, and Leu(186) → Tyr replaces porcine with E. coli type side chains. Both single and triple mutations significantly reduce synergism while retaining other wild-type kinetic properties. Similar to the effect of Fru-2,6-P2 on eFBPase, the triple mutant of pFBPase with bound Fru-2,6-P2 exhibits only a 2° subunit pair rotation as opposed to the 13° rotation exhibited by the Fru-2,6-P2 complex of wild-type pFBPase. The side chain at position 45 is small in all available eukaryotic FBPases but large and hydrophilic in bacterial FBPases, similar to eFBPase. Sequence information indicates the likelihood of synergism in the FBPase from Leptospira interrogans (lFBPase), and indeed recombinant lFBPase exhibits AMP/Fru-2,6-P2 synergism. Unexpectedly, however, AMP also enhances Fru-6-P binding to lFBPase. Taken together, these observations suggest the evolution of AMP/Fru-2,6-P2 synergism in eukaryotic FBPases from an ancestral FBPase having a central aqueous cavity and exhibiting synergistic feedback inhibition by AMP and Fru-6-P.

Indexed as

Adenosine MonophosphateAmino Acid SequenceAnimalsBinding SitesEvolution, MolecularFructose-BisphosphataseFructosediphosphatesKineticsModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedProtein ConformationSwineAdenosine Monophosphatefructose 2,6-diphosphateFructose-BisphosphataseFructosediphosphatesAllosteric RegulationCrystal StructureEnzyme InhibitorsEnzyme KineticsEvolutionGluconeogenesisMetabolism

Identifiers

PMID24436333
PMCPMC3961670

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.