Evidence map›Paper›PMID 24435047›Full record

ArticleBlood2014

Mutations in linker histone genes HIST1H1 B, C, D, and E; OCT2 (POU2F2); IRF8; and ARID1A underlying the pathogenesis of follicular lymphoma.

Hongxiu Li, Mark S Kaminski, Yifeng Li, Mehmet Yildiz, Peter Ouillette, Siân Jones, Heather Fox, Kathryn Jacobi, Kamlai Saiya-Cork, Dale Bixby and 8 more

Open access · greenAbstract read
In one paragraph

Article in Blood, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed, 1 pooled it
12.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed, 1 synthesis or guideline pooled it, 182 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. The Spectrum and Clinical Impact of Epigenetic Modifier Mutations in Myeloma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2016
    Trial
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Review
  10. B Cell Lymphoma 6 (BCL6): A Conserved Regulator of Immunity and Beyond.International journal of molecular sciences · 2024
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
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  20. Article

49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 2 institutions in 2 countries.

Hongxiu LiDepartment of Internal Medicine, Division of Hematology and Oncology, University of Michigan, Ann Arbor, MI;
Mark S Kaminski
Yifeng Li
Mehmet Yildiz
Peter Ouillette
Siân Jones
Heather Fox
Kathryn Jacobi
Kamlai Saiya-Cork
Dale Bixby
Daniel Lebovic
Diane Roulston
Kerby Shedden
Michael Sabel
Lawrence Marentette
Vincent Cimmino
Alfred E Chang
Sami N Malek
University of Michigan–Ann Arbor · USHuman Genome Sciences (United States) · US

Funding

The genomic pathogenesis of Follicular LymphomaR01CA190384 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MALEK, SAMI NIMER, WENDEL, HANS-GUIDO · 2015 to 2019
$2.7M
NCI NIH HHS R01 CA190384
6 · The paper itself

Abstract

Follicular lymphoma (FL) constitutes the second most common non-Hodgkin lymphoma in the western world. FL carries characteristic recurrent structural genomic aberrations. However, information regarding the coding genome in FL is still evolving. Here, we describe the results of massively parallel exome sequencing and single nucleotide polymorphism 6.0 array genomic profiling of 11 highly purified FL cases, and 1 transformed FL case and the validation of selected mutations in 102 FL cases. We report the identification of 15 novel recurrently mutated genes in FL. These include frequent mutations in the linker histone genes HIST1H1 B-E (27%) and mutations in OCT2 (also known as POU2F2; 8%), IRF8 (6%), and ARID1A (11%). A subset of the mutations in HIST1H1 B-E affected binding to DNMT3B, and mutations in HIST1H1 B-E and in EZH2 or ARID1A were largely mutually exclusive, implicating HIST1H1 B-E in epigenetic deregulation in FL. Mutations in OCT2 (POU2F2) affected its transcriptional and functional properties as measured through luciferase assays, the biological analysis of stably transduced cell lines, and global expression profiling. Finally, multiple novel mutated genes located within regions of acquired uniparental disomy in FL are identified. In aggregate, these data substantially broaden our understanding of the genomic pathogenesis of FL.

Indexed as

MutationOctamer Transcription Factor-2Amino Acid SequenceCREB-Binding ProteinDNA-Binding ProteinsDNA Mutational AnalysisEnhancer of Zeste Homolog 2 ProteinEpigenesis, GeneticExomeHigh-Throughput Nucleotide SequencingHistonesHumansInterferon Regulatory Factor-8Interferon Regulatory FactorsLymphoma, FollicularMolecular Sequence DataARID1A protein, humanCREB-Binding ProteinCREBBP protein, humanDNA-Binding ProteinsEnhancer of Zeste Homolog 2 ProteinEZH2 protein, humanHistonesInterferon Regulatory Factor-8Interferon Regulatory FactorsKMT2D protein, humanNeoplasm ProteinsNuclear ProteinsOctamer Transcription Factor-2Polycomb Repressive Complex 2Proto-Oncogene Proteins c-bcl-2Receptors, Tumor Necrosis Factor, Member 14TNFRSF14 protein, humanTranscription Factors

Identifiers

PMID24435047
PMCPMC4729540
OpenAlexW1977295792

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.