Evidence map›Paper›PMID 24434582›Full record

ArticleJournal of cell science2014

Integrin α3β1 controls mRNA splicing that determines Cox-2 mRNA stability in breast cancer cells.

Sita Subbaram, Scott P Lyons, Kimberly B Svenson, Sean L Hammond, Lorena G McCabe, Sridar V Chittur, C Michael DiPersio

Abstract read
In one paragraph

Article in Journal of cell science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Modulation of the Mechanosensory Matrisome by Serotonergic Signaling.Results and problems in cell differentiation · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Alternative RNA structure-coupled gene regulations in tumorigenesis.International journal of molecular sciences · 2014
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Sita SubbaramCenter for Cell Biology and Cancer Research, Albany Medical College, MC-165, 47 New Scotland Avenue, Albany, NY 12208, USA.
Scott P Lyons
Kimberly B Svenson
Sean L Hammond
Lorena G McCabe
Sridar V Chittur
C Michael DiPersio
Albany Medical Center Hospital · USUniversity at Albany, State University of New York · US

Funding

Regulation of MMP-9 mRNA stability and tumor growth by alpha3 beta1 integrinR01CA129637 · NCI · ALBANY MEDICAL COLLEGE · PI DIPERSIO, C. MICHAEL · 2008 to 2020
$3.3M
Concerted role for integrin alpha3beta1 and TGFb signaling in cancer progressionF32CA153976 · NCI · ALBANY MEDICAL COLLEGE · PI SUBBARAM, SITA · 2010 to 2013
$160k
NCI NIH HHS F32 CA153976NCI NIH HHS F32-CA153976NCI NIH HHS R01 CA129637NCI NIH HHS R01CA129637
6 · The paper itself

Abstract

It is unknown how cues from the tumor microenvironment can regulate post-transcriptional mechanisms, such as alternative splicing, that control genes that drive malignant growth. The induction of cyclooxygenase 2 (Cox-2) by integrin α3β1 in breast cancer cells can promote tumor progression. We have used RNAi to suppress α3β1 in human MDA-MB-231 breast cancer cells and then investigated changes in global gene expression. Numerous mRNAs, including Cox-2, show altered expression and/or alternative exon usage (AEU) in α3β1-deficient cells. AEU included patterns predicted to render an mRNA susceptible to degradation, such as 3'-UTR variations or retention of elements that target an mRNA for nonsense-mediated decay (NMD). PCR-based analysis of α3β1-deficient cells confirmed changes in Cox-2 mRNA that might target it for NMD, including retention of an intron that harbors premature termination codons and changes within the 3'-UTR. Moreover, Cox-2 mRNA has reduced stability in α3β1-deficient cells, which is partially reversed by knockdown of the essential NMD factor UPF1. Our study identifies α3β1-mediated AEU as a novel paradigm of integrin-dependent gene regulation that has potential for exploitation as a therapeutic target.

Indexed as

Nonsense Mediated mRNA DecayAlternative SplicingAmino Acid SequenceBase SequenceBreast NeoplasmsCell Line, TumorCyclooxygenase 2FemaleGene Expression Regulation, NeoplasticHumansIntegrin alpha3beta1IntronsLamininMolecular Sequence DataProtein BindingRNA HelicasesCyclooxygenase 2Integrin alpha3beta1LamininPTGS2 protein, humanRNA HelicasesRNA, MessengerTrans-ActivatorsUPF1 protein, humanAlternative splicingBreast cancerCox-2Nonsense-mediated mRNA decayα3β1 integrin

Identifiers

PMID24434582
PMCPMC3953813
OpenAlexW2095484924

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.