Evidence map›Paper›PMID 24432195›Full record

ArticlePeerJ2013

Genome engineering of mammalian haploid embryonic stem cells using the Cas9/RNA system.

Takuro Horii, Sumiyo Morita, Mika Kimura, Ryouhei Kobayashi, Daiki Tamura, Ryou-U Takahashi, Hironobu Kimura, Isao Suetake, Hirokazu Ohata, Koji Okamoto and 4 more

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 44 citations in OpenAlex.

  1. Cyclic DNA remethylation following active demethylation at euchromatic regions in mouse embryonic stem cells.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2021
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. A versatile genetic tool: haploid cells.Stem cell research & therapy · 2017
    Review
  7. Article
  8. Article
  9. Regulation of CpG methylation by Dnmt and Tet in pluripotent stem cells.The Journal of reproduction and development · 2016
    Review
  10. Article
  11. Review
  12. Article
  13. Genome Editing Using Mammalian Haploid Cells.International journal of molecular sciences · 2015
    Review
  14. Review
  15. CrisprGE: a central hub of CRISPR/Cas-based genome editing.Database : the journal of biological databases and curation · 2015
    Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Takuro HoriiLaboratory of Genome Science, Biosignal Genome Resource Center, Institute for Molecular and Cellular Regulation, Gunma University , Maebashi, Gunma , Japan.
Sumiyo MoritaLaboratory of Genome Science, Biosignal Genome Resource Center, Institute for Molecular and Cellular Regulation, Gunma University , Maebashi, Gunma , Japan.
Mika KimuraLaboratory of Genome Science, Biosignal Genome Resource Center, Institute for Molecular and Cellular Regulation, Gunma University , Maebashi, Gunma , Japan.
Ryouhei KobayashiLaboratory of Genome Science, Biosignal Genome Resource Center, Institute for Molecular and Cellular Regulation, Gunma University , Maebashi, Gunma , Japan ; Department of Laboratory Sciences, Graduate School of Health Sciences, Gunma University , Maebashi, Gunma , Japan.
Daiki TamuraLaboratory of Genome Science, Biosignal Genome Resource Center, Institute for Molecular and Cellular Regulation, Gunma University , Maebashi, Gunma , Japan.
Ryou-U TakahashiDivision of Molecular and Cellular Medicine, National Cancer Center Research Institute , Chuo-ku, Tokyo , Japan.
Hironobu KimuraLaboratory of Epigenetics, Institute for Protein Research, Osaka University , Suita, Osaka , Japan.
Isao SuetakeLaboratory of Epigenetics, Institute for Protein Research, Osaka University , Suita, Osaka , Japan.
Hirokazu OhataDivision of Cancer Development System, National Cancer Center Research Institute , Chuo-ku, Tokyo , Japan.
Koji OkamotoDivision of Cancer Development System, National Cancer Center Research Institute , Chuo-ku, Tokyo , Japan.
Shoji TajimaLaboratory of Epigenetics, Institute for Protein Research, Osaka University , Suita, Osaka , Japan.
Takahiro OchiyaDivision of Molecular and Cellular Medicine, National Cancer Center Research Institute , Chuo-ku, Tokyo , Japan.
Yumiko AbeDepartment of Laboratory Sciences, Graduate School of Health Sciences, Gunma University , Maebashi, Gunma , Japan.
Izuho HatadaLaboratory of Genome Science, Biosignal Genome Resource Center, Institute for Molecular and Cellular Regulation, Gunma University , Maebashi, Gunma , Japan.
Gunma University · JPOsaka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Haploid embryonic stem cells (ESCs) are useful for studying mammalian genes because disruption of only one allele can cause loss-of-function phenotypes. Here, we report the use of haploid ESCs and the CRISPR RNA-guided Cas9 nuclease gene-targeting system to manipulate mammalian genes. Co-transfection of haploid ESCs with vectors expressing Cas9 nuclease and single-guide RNAs (sgRNAs) targeting Tet1, Tet2, and Tet3 resulted in the complete disruption of all three genes and caused a loss-of-function phenotype with high efficiency (50%). Co-transfection of cells with vectors expressing Cas9 and sgRNAs targeting two loci on the same chromosome resulted in the creation of a large chromosomal deletion and a large inversion. Thus, the use of the CRISPR system in combination with haploid ESCs provides a powerful platform to manipulate the mammalian genome.

Indexed as

CRISPR/CasEmbryonic stem cellsGenome engineeringHaploidTet1Tet2Tet3

Identifiers

PMID24432195
PMCPMC3883491
OpenAlexW2048274494

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.