Evidence map›Paper›PMID 24430487›Full record

ArticleThe ISME journal2014

Deep-sea hydrothermal vent Epsilonproteobacteria encode a conserved and widespread nitrate reduction pathway (Nap).

Costantino Vetriani, James W Voordeckers, Melitza Crespo-Medina, Charles E O'Brien, Donato Giovannelli, Richard A Lutz

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 94 citations in OpenAlex.

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  14. The Genome ofMicroorganisms · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Costantino Vetriani1] Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ, USA [2] Institute of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ, USA.
James W Voordeckers1] Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ, USA [2] Institute of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ, USA.
Melitza Crespo-Medina1] Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ, USA [2] Institute of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ, USA.
Charles E O'Brien1] Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ, USA [2] Institute of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ, USA.
Donato Giovannelli1] Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ, USA [2] Institute of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ, USA [3] Institute of Marine Science - ISMAR, National Research Council of Italy, CNR, Ancona, Italy.
Richard A LutzInstitute of Marine and Coastal Sciences, Rutgers University, New Brunswick, NJ, USA.
Institute of Marine and Coastal Research · ARRutgers, The State University of New Jersey · USInstitute of Marine Science · ITUniversity of Oklahoma · US

Funding

UMDNJ TRAINING GRANT IN BIOTECHNOLOGYT32GM008339 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI YARMUSH, MARTIN L · 1989 to 2019
$6.1M
NIGMS NIH HHS 5 T32 GM08339NIGMS NIH HHS T32 GM008339
6 · The paper itself

Abstract

Despite the frequent isolation of nitrate-respiring Epsilonproteobacteria from deep-sea hydrothermal vents, the genes coding for the nitrate reduction pathway in these organisms have not been investigated in depth. In this study we have shown that the gene cluster coding for the periplasmic nitrate reductase complex (nap) is highly conserved in chemolithoautotrophic, nitrate-reducing Epsilonproteobacteria from deep-sea hydrothermal vents. Furthermore, we have shown that the napA gene is expressed in pure cultures of vent Epsilonproteobacteria and it is highly conserved in microbial communities collected from deep-sea vents characterized by different temperature and redox regimes. The diversity of nitrate-reducing Epsilonproteobacteria was found to be higher in moderate temperature, diffuse flow vents than in high temperature black smokers or in low temperatures, substrate-associated communities. As NapA has a high affinity for nitrate compared with the membrane-bound enzyme, its occurrence in vent Epsilonproteobacteria may represent an adaptation of these organisms to the low nitrate concentrations typically found in vent fluids. Taken together, our findings indicate that nitrate reduction is widespread in vent Epsilonproteobacteria and provide insight on alternative energy metabolism in vent microorganisms. The occurrence of the nap cluster in vent, commensal and pathogenic Epsilonproteobacteria suggests that the ability of these bacteria to respire nitrate is important in habitats as different as the deep-sea vents and the human body.

Indexed as

Bacterial ProteinsEcosystemEpsilonproteobacteriaHydrothermal VentsNitrate ReductaseNitratesOxidation-ReductionPhylogenyRNA, BacterialRNA, Ribosomal, 16STemperatureBacterial ProteinsNitrate ReductaseNitratesRNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID24430487
PMCPMC4069388
OpenAlexW1990228969

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.