Evidence map›Paper›PMID 24430173›Full record

ArticleGenes and immunity2014

A gene pathway analysis highlights the role of cellular adhesion molecules in multiple sclerosis susceptibility.

V Damotte, L Guillot-Noel, N A Patsopoulos, L Madireddy, M El Behi, International Multiple Sclerosis Genetics Consortium, Wellcome Trust Case Control Consortium 2, P L De Jager, S E Baranzini, I Cournu-Rebeix and 1 more

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Genes and immunity, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 33 citations in OpenAlex.

  1. Pooled it
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  5. Review
  6. Article
  7. Pleiotropic Roles of P2X7 in the Central Nervous System.Frontiers in cellular neuroscience · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 8 institutions in 4 countries.

V DamotteUPMC-INSERM-UMR_S 1127-CNRS UMR7225, Paris, France.
L Guillot-NoelUPMC-INSERM-UMR_S 1127-CNRS UMR7225, Paris, France.
N A Patsopoulos1] Departments of Neurology and Psychiatry, Institute for the Neurosciences, Brigham & Women's Hospital, Boston, MA, USA [2] Division of Genetics, Department of Medicine, Brigham & Women's Hospital, Harvard Medical School, Boston, MA, USA [3] Harvard Medical School, Boston, MA, USA [4] Broad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, MA, USA.
L MadireddyDepartment of Neurology, University of California at San Francisco, Sandler Neurosciences Center, San Francisco, CA, USA.
M El Behi1] UPMC-INSERM-UMR_S 1127-CNRS UMR7225, Paris, France [2] Institut du Cerveau et de la Moelle épinière-ICM, Paris, France.
International Multiple Sclerosis Genetics Consortium
Wellcome Trust Case Control Consortium 2
P L De Jager1] Departments of Neurology and Psychiatry, Institute for the Neurosciences, Brigham & Women's Hospital, Boston, MA, USA [2] Harvard Medical School, Boston, MA, USA [3] Broad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, MA, USA.
S E BaranziniDepartment of Neurology, University of California at San Francisco, Sandler Neurosciences Center, San Francisco, CA, USA.
I Cournu-Rebeix1] UPMC-INSERM-UMR_S 1127-CNRS UMR7225, Paris, France [2] Assistance Publique-Hôpitaux de Paris (AP-HP), Département des Maladies du Systéme Nerveux, Hôpital Pitié-Salpêtrière, Paris, France.
B Fontaine1] UPMC-INSERM-UMR_S 1127-CNRS UMR7225, Paris, France [2] Assistance Publique-Hôpitaux de Paris (AP-HP), Département des Maladies du Systéme Nerveux, Hôpital Pitié-Salpêtrière, Paris, France.
Sorbonne Université · FRInserm · FRMassachusetts Institute of Technology · USAssistance Publique – Hôpitaux de Paris · FRBrigham and Women's Hospital · USBroad Institute · USCentre National de la Recherche Scientifique · FRMultiple Sclerosis Trust · GB

Funding

Wellcome Trust 090532
6 · The paper itself

Abstract

Genome-wide association studies (GWASs) perform per-SNP association tests to identify variants involved in disease or trait susceptibility. However, such an approach is not powerful enough to unravel genes that are not individually contributing to the disease/trait, but that may have a role in interaction with other genes as a group. Pathway analysis is an alternative way to highlight such group of genes. Using SNP association P-values from eight multiple sclerosis (MS) GWAS data sets, we performed a candidate pathway analysis for MS susceptibility by considering genes interacting in the cell adhesion molecule (CAMs) biological pathway using Cytoscape software. This network is a strong candidate, as it is involved in the crossing of the blood-brain barrier by the T cells, an early event in MS pathophysiology, and is used as an efficient therapeutic target. We drew up a list of 76 genes belonging to the CAM network. We highlighted 64 networks enriched with CAM genes with low P-values. Filtering by a percentage of CAM genes up to 50% and rejecting enriched signals mainly driven by transcription factors, we highlighted five networks associated with MS susceptibility. One of them, constituted of ITGAL, ICAM1 and ICAM3 genes, could be of interest to develop novel therapeutic targets.

Indexed as

Antigens, CDBlood-Brain BarrierCell Adhesion MoleculesGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansIntegrin alpha ChainsIntercellular Adhesion Molecule-1Multiple SclerosisPolymorphism, Single NucleotideSignal TransductionT-LymphocytesAntigens, CDCell Adhesion MoleculesICAM1 protein, humanICAM3 protein, humanIntegrin alpha ChainsIntercellular Adhesion Molecule-1

Identifiers

PMID24430173
OpenAlexW2067129475

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.