Evidence map›Paper›PMID 24428801›Full record

ArticleEnvironmental microbiology2014

Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett Salt Marsh.

Elizabeth G Wilbanks, Ulrike Jaekel, Verena Salman, Parris T Humphrey, Jonathan A Eisen, Marc T Facciotti, Daniel H Buckley, Stephen H Zinder, Gregory K Druschel, David A Fike and 1 more

Abstract read
In one paragraph

Article in Environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed.

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  7. Targeted hypermutation of putative antigen sensors in multicellular bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  8. Article
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  12. The chemical ecology of coumarins and phenazines affects iron acquisition by pseudomonads.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Article
  14. Article
  15. Leveraging phylogenetic signal to unravel microbiome function and assembly rules.Computational and structural biotechnology journal · 2023
    Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Elizabeth G WilbanksDepartment of Department of Microbiology Graduate Group, University of California, Davis, CA, 95616, USA.
Ulrike Jaekel
Verena Salman
Parris T Humphrey
Jonathan A Eisen
Marc T Facciotti
Daniel H Buckley
Stephen H Zinder
Gregory K Druschel
David A Fike
Victoria J Orphan

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microbial metabolism is the engine that drives global biogeochemical cycles, yet many key transformations are carried out by microbial consortia over short spatiotemporal scales that elude detection by traditional analytical approaches. We investigate syntrophic sulfur cycling in the 'pink berry' consortia of the Sippewissett Salt Marsh through an integrative study at the microbial scale. The pink berries are macroscopic, photosynthetic microbial aggregates composed primarily of two closely associated species: sulfide-oxidizing purple sulfur bacteria (PB-PSB1) and sulfate-reducing bacteria (PB-SRB1). Using metagenomic sequencing and (34) S-enriched sulfate stable isotope probing coupled with nanoSIMS, we demonstrate interspecies transfer of reduced sulfur metabolites from PB-SRB1 to PB-PSB1. The pink berries catalyse net sulfide oxidation and maintain internal sulfide concentrations of 0-500 μm. Sulfide within the berries, captured on silver wires and analysed using secondary ion mass spectrometer, increased in abundance towards the berry interior, while δ(34) S-sulfide decreased from 6‰ to -31‰ from the exterior to interior of the berry. These values correspond to sulfate-sulfide isotopic fractionations (15-53‰) consistent with either sulfate reduction or a mixture of reductive and oxidative metabolisms. Together this combined metagenomic and high-resolution isotopic analysis demonstrates active sulfur cycling at the microscale within well-structured macroscopic consortia consisting of sulfide-oxidizing anoxygenic phototrophs and sulfate-reducing bacteria.

Indexed as

Microbial ConsortiaWetlandsBacteriaChromatiaceaeMetagenomeOxidation-ReductionPhotosynthesisPhylogenySulfatesSulfidesSulfurSulfatesSulfidesSulfur

Identifiers

PMID24428801
PMCPMC4262008

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.