Evidence map›Paper›PMID 24426253›Full record

ArticleIndian journal of virology : an official organ of Indian Virological Society2013

Development of a probe based real time PCR assay for detection of bovine herpes virus-1 in semen and other clinical samples.

Basavegowdanadoddi Marinaik Chandranaik, Doddamane Rathnamma, S S Patil, Ramesh C Kovi, Jyotsana Dhawan, Shakunigowda Ranganatha, Shrikrishna Isloor, C Renukaprasad, K Prabhudas

Abstract read
In one paragraph

Article in Indian journal of virology : an official organ of Indian Virological Society, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Basavegowdanadoddi Marinaik ChandranaikDepartment of Veterinary Microbiology, Veterinary College, Karnataka Veterinary Animal and Fisheries Sciences University, Hebbal, Bangalore, 560 024 Karnataka India.
Doddamane RathnammaDepartment of Veterinary Microbiology, Veterinary College, Karnataka Veterinary Animal and Fisheries Sciences University, Hebbal, Bangalore, 560 024 Karnataka India.
S S PatilProject Directorate on Animal Disease Monitoring and Surveillance, Hebbal, Bangalore, 560 024 Karnataka India.
Ramesh C KoviDepartment of Veterinary Population Medicine, University of Minnesota, St. Paul, MN 55108 USA.
Jyotsana DhawanInstitute of Stem Cells, National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, 560 065 Karnataka India.
Shakunigowda RanganathaDepartment of Veterinary Microbiology, Veterinary College, Karnataka Veterinary Animal and Fisheries Sciences University, Hebbal, Bangalore, 560 024 Karnataka India.
Shrikrishna IsloorDepartment of Veterinary Microbiology, Veterinary College, Karnataka Veterinary Animal and Fisheries Sciences University, Hebbal, Bangalore, 560 024 Karnataka India.
C RenukaprasadInstitute of Animal Health and Veterinary Biologicals, Bangalore, 560 024 India.
K PrabhudasProject Directorate on Animal Disease Monitoring and Surveillance, Hebbal, Bangalore, 560 024 Karnataka India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study describes development of a TaqMan probe based real time PCR assay that can detect BoHV-1 of as low as 0.001 TCID50/0.1 ml in clinical samples, its comparative evaluation with indirect ELISA and virus isolation for detection of Bovine herpes virus-1 (BoHV-1) in semen and swab clinical samples. For this study, we collected samples from 212 animals (cattle and buffaloes) comprising 91 bulls and 121 females. Avidin-biotin ELISA employed on serum samples from 212 animals revealed 74 as seropositive for BoHV-1. On inoculation of semen/swabs on MDBK cell line, nine samples yielded cytopathic changes characteristic of herpes viruses. The isolates were confirmed by VNT and a conventional PCR. A real time PCR assay was standardised by designing a new set of TaqMan probe and primers targeting a 71 bp region on gB gene of the virus. The assay detected viral antigen in 21 seropositive and 14 seronegative animals, emphasizing the relevance of serology in BoHV-1 diagnosis, particularly in breeding stations. Further, real time PCR assay was 100 % sensitive and 87.19 % specific compared to virus isolation in detection of the BoHV-1 in clinical samples. The assay was validated at reputed national laboratories, with a sensitivity of ≥99 %.

Indexed as

Bovine herpes virus-1Indirect ELISAReal time PCRVirus isolation

Identifiers

PMID24426253
PMCPMC3650191

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