Evidence map›Paper›PMID 24424575›Full record

ArticleProtein science : a publication of the Protein Society2014

Crystal structure of the transcriptional regulator Rv1219c of Mycobacterium tuberculosis.

Nitin Kumar, Abhijith Radhakrishnan, Catherine C Wright, Tsung-Han Chou, Hsiang-Ting Lei, Jani Reddy Bolla, Marios L Tringides, Kanagalaghatta R Rajashankar, Chih-Chia Su, Georgiana E Purdy and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Transcriptional regulation and drug resistance inFrontiers in cellular and infection microbiology · 2022
    Review
  7. Article
  8. Review
  9. Crystal structure of the Mycobacterium tuberculosis transcriptional regulator Rv0302.Protein science : a publication of the Protein Society · 2015
    Article
  10. Article
  11. Molecular mechanisms of antibiotic resistance.Nature reviews. Microbiology · 2015
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Nitin KumarDepartment of Chemistry, Iowa State University, Ames, Iowa, 50011.
Abhijith Radhakrishnan
Catherine C Wright
Tsung-Han Chou
Hsiang-Ting Lei
Jani Reddy Bolla
Marios L Tringides
Kanagalaghatta R Rajashankar
Chih-Chia Su
Georgiana E Purdy
Edward W Yu
Iowa State University · USOregon Health & Science University · USArgonne National Laboratory · US

Funding

Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
TB Membrane Transporters and Intrinsic ResistanceR01AI087840 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI PURDY, GEORGIANA E. · 2011 to 2015
$1.9M
Metal ion export in bacteriaR01GM086431 · NIGMS · IOWA STATE UNIVERSITY · PI YU, EDWARD W · 2010 to 2013
$1.1M
NIAID NIH HHS R01 AI087840NIAID NIH HHS R01AI087840NIGMS NIH HHS GM103403NIGMS NIH HHS P41 GM103403NIGMS NIH HHS R01 GM086431NIGMS NIH HHS R01GM086431
6 · The paper itself

Abstract

The Rv1217c-Rv1218c multidrug efflux system, which belongs to the ATP-binding cassette superfamily, recognizes and actively extrudes a variety of structurally unrelated toxic chemicals and mediates the intrinsic resistance to these antimicrobials in Mycobacterium tuberculosis. The expression of Rv1217c-Rv1218c is controlled by the TetR-like transcriptional regulator Rv1219c, which is encoded by a gene immediately upstream of rv1218c. To elucidate the structural basis of Rv1219c regulation, we have determined the crystal structure of Rv1219c, which reveals a dimeric two-domain molecule with an entirely helical architecture similar to members of the TetR family of transcriptional regulators. The N-terminal domains of the Rv1219c dimer are separated by a large center-to-center distance of 64 Å. The C-terminal domain of each protomer possesses a large cavity. Docking of small compounds to Rv1219c suggests that this large cavity forms a multidrug binding pocket, which can accommodate a variety of structurally unrelated antimicrobial agents. The internal wall of the multidrug binding site is surrounded by seven aromatic residues, indicating that drug binding may be governed by aromatic stacking interactions. In addition, fluorescence polarization reveals that Rv1219c binds drugs in the micromolar range.

Indexed as

Bacterial ProteinsCrystallizationCrystallography, X-RayModels, MolecularMycobacterium tuberculosisProtein ConformationTranscription FactorsBacterial ProteinsTranscription Factorsmultidrug resistanceMycobacterium tuberculosisRv1219c multidrug efflux regulatortranscriptional regulation

Identifiers

PMID24424575
PMCPMC3970893
OpenAlexW2152375207

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.