Evidence map›Paper›PMID 24424412›Full record

ArticleeLife2014

Coordinated genomic control of ciliogenesis and cell movement by RFX2.

Mei-I Chung, Taejoon Kwon, Fan Tu, Eric R Brooks, Rakhi Gupta, Matthew Meyer, Julie C Baker, Edward M Marcotte, John B Wallingford

Open access · goldAbstract readVideo-Audio Media
In one paragraph

Article in eLife, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed
10.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 143 citations in OpenAlex.

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  10. Cilia and transcription: a mini review.Frontiers in cell and developmental biology · 2025
    Review
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  12. Article
  13. Article
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  20. Mechanism of Human Tubal Ectopic Pregnancy Caused by Cigarette Smoking.Reproductive sciences (Thousand Oaks, Calif.) · 2023
    Review

37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Mei-I ChungDepartment of Molecular Biosciences, University of Texas at Austin, Austin, United States.
Taejoon Kwon
Fan Tu
Eric R Brooks
Rakhi Gupta
Matthew Meyer
Julie C Baker
Edward M Marcotte
John B Wallingford
The University of Texas at Austin · USStanford University · US

Funding

Development and function in mucociliary epitheliaR01HL117164 · NHLBI · UNIVERSITY OF TEXAS AT AUSTIN · PI John B Wallingford · 2013 to 2026
$4.7M
Mechanism of vertebrate neural tube morphogenesisR01GM074104 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI WALLINGFORD, JOHN B · 2005 to 2014
$2.6M
Biochemical predictions of regulatory elements and XenMINE for XenopusR01HD076839 · NICHD · STANFORD UNIVERSITY · PI BAKER, JULIE C, CHERRY, J. MICHAEL · 2013 to 2017
$2.3M
NHLBI NIH HHS R01 HL117164NICHD NIH HHS R01 HD076839NIGMS NIH HHS R01 GM074104
6 · The paper itself

Abstract

The mechanisms linking systems-level programs of gene expression to discrete cell biological processes in vivo remain poorly understood. In this study, we have defined such a program for multi-ciliated epithelial cells (MCCs), a cell type critical for proper development and homeostasis of the airway, brain and reproductive tracts. Starting from genomic analysis of the cilia-associated transcription factor Rfx2, we used bioinformatics and in vivo cell biological approaches to gain insights into the molecular basis of cilia assembly and function. Moreover, we discovered a previously un-recognized role for an Rfx factor in cell movement, finding that Rfx2 cell-autonomously controls apical surface expansion in nascent MCCs. Thus, Rfx2 coordinates multiple, distinct gene expression programs in MCCs, regulating genes that control cell movement, ciliogenesis, and cilia function. As such, the work serves as a paradigm for understanding genomic control of cell biological processes that span from early cell morphogenetic events to terminally differentiated cellular functions. DOI: http://dx.doi.org/10.7554/eLife.01439.001.

Indexed as

AnimalsCell MovementCiliaComputational BiologyDatabases, GeneticDNA-Binding ProteinsEmbryo, NonmammalianEpithelial CellsGene Expression Regulation, DevelopmentalGene Regulatory NetworksHumansMorphogenesisRegulatory Factor X Transcription FactorsSignal TransductionTranscription FactorsXenopus laevisDNA-Binding ProteinsRegulatory Factor X Transcription FactorsRFX2 protein, humanRFX2 protein, XenopusTranscription FactorsXenopus Proteinsciliacilia beatinggenomicsmucociliary epitheliummulticiliated cellsnme5protofilament ribbonRfx2ribc2ttc29

Identifiers

PMID24424412
PMCPMC3889689
OpenAlexW2005325564

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.