Evidence map›Paper›PMID 24424263›Full record

ArticleExperimental eye research2014

Thiol-dependent antioxidant activity of interphotoreceptor retinoid-binding protein.

Federico Gonzalez-Fernandez, Dongjin Sung, Karen M Haswell, Andrew Tsin, Debashis Ghosh

Open access · greenAbstract read
In one paragraph

Article in Experimental eye research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Resilience to diabetic retinopathy.Progress in retinal and eye research · 2024
    Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
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  11. Single particle cryo-EM of the complex between interphotoreceptor retinoid-binding protein and a monoclonal antibody.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Interphotoreceptor retinoid-binding protein removes all-The Journal of biological chemistry · 2017
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Federico Gonzalez-FernandezMedical Research Service, Veterans Affairs Medical Center, Buffalo, NY, USA; Departments of Ophthalmology (Ross Eye Institute) and Pathology & Anatomic Sciences, the State University of New York, Buffalo, NY, USA; SUNY Eye Institute, State University of New York, NY, USA. Electronic address: fg23@buffalo.edu.
Dongjin SungDepartments of Ophthalmology (Ross Eye Institute) and Pathology & Anatomic Sciences, the State University of New York, Buffalo, NY, USA.
Karen M HaswellDepartment of Pharmacology, SUNY Upstate Medical University, Syracuse, NY, USA.
Andrew TsinDepartment of Biology, The University of Texas at San Antonio, San Antonio, TX, USA.
Debashis GhoshDepartment of Pharmacology, SUNY Upstate Medical University, Syracuse, NY, USA; Upstate Cancer Research Institute, SUNY Upstate Medical University, Syracuse, NY, USA. Electronic address: ghoshd@upstate.edu.
SUNY Upstate Medical University · USState University of New York · USThe University of Texas at San Antonio · USUniversity at Buffalo, State University of New York · US

Funding

STRUCTURAL VISUALIZATION IN BIOINFORMATICSG12RR013646 · NCRR · UNIVERSITY OF TEXAS SAN ANTONIO · PI JOSE-YACAMAN, MIGUEL · 1998 to 2011
$19.6M
RCMI Center for Interdiscplinary Health Research CIHRG12MD007591 · NIMHD · UNIVERSITY OF TEXAS SAN ANTONIO · PI PERRY, GEORGE · 2012 to 2016
$10.4M
IRBP--STRUCTURE/FUNCTIONR01EY009412 · NEI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI GHOSH, DEBASHIS, GONZALEZ-FERNANDEZ, FEDERICO · 1999 to 2011
$3.0M
UB VISION INFRASTRUCTURE CENTERR24EY016662 · NEI · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI SULLIVAN, JACK M · 2005 to 2009
$989k
NCRR NIH HHS 5 G12RR013646-12NCRR NIH HHS G12 RR013646NEI NIH HHS R01 EY009412NEI NIH HHS R01 EY09412NEI NIH HHS R24 EY 016662NEI NIH HHS R24 EY016662NIMHD NIH HHS G12 MD007591NIMHD NIH HHS G12MD007591
6 · The paper itself

Abstract

Interphotoreceptor retinoid-binding protein (IRBP), which is critical to photoreceptor survival and function, is comprised of homologous tandem modules each ∼300 amino acids, and contains 10 cysteines, possibly 8 as free thiols. Purification of IRBP has historically been difficult due to aggregation, denaturation and precipitation. Our observation that reducing agent 1,4-dithiothreitol dramatically prevents aggregation prompted investigation of possible functions for IRBP's free thiols. Bovine IRBP (bIRBP) was purified from retina saline washes by a combination of concanavalin A, ion exchange and size exclusion chromatography. Antioxidant activity of the purified protein was measured by its ability to inhibit oxidation of 2,2'-azinobis [3-ethylbenzothiazoline-6-sulfonate] by metmyoglobin. Homology modeling predicted the relationship of the retinoid binding sites to cysteine residues. As a free radical scavenger, bIRBP was more active than ovalbumin, thioredoxin, and vitamin E analog Trolox. Alkylation of free cysteines by N-ethylmaleimide inhibited bIRBP's antioxidant activity, but not its ability to bind all-trans retinol. Structural modeling predicted that Cys 1051 is at the mouth of the module 4 hydrophobic ligand-binding site. Its free radical scavenging activity points to a new function for IRBP in defining the redox environment in the subretinal space.

Indexed as

AnimalsAntioxidantsBenzothiazolesCattleChromatography, AffinityChromatography, GelChromatography, Ion ExchangeCrystallizationCrystallography, X-RayEye ProteinsFree Radical ScavengersMetmyoglobinOxidation-ReductionRetinaRetinol-Binding ProteinsRetinol-Binding Proteins, Interstitial2,2'-azino-di-(3-ethylbenzothiazoline)-6-sulfonic acidAntioxidantsBenzothiazolesEye ProteinsFree Radical ScavengersMetmyoglobinRetinol-Binding ProteinsRetinol-Binding Proteins, InterstitialSulfhydryl CompoundsSulfonic Acidscrystallographyinterphotoreceptor matrixinterphotoreceptor-retinoid binding proteinphotoreceptorsretinaretinoid binding proteinvisual cycleX-ray structure

Identifiers

PMID24424263
PMCPMC4149907
OpenAlexW2099348928

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.