Evidence map›Paper›PMID 24423872›Full record

ArticleNucleic acids research2014

AUF1 contributes to Cryptochrome1 mRNA degradation and rhythmic translation.

Kyung-Ha Lee, Sung-Hoon Kim, Hyo-Jin Kim, Wanil Kim, Hwa-Rim Lee, Youngseob Jung, Jung-Hyun Choi, Ka Young Hong, Sung Key Jang, Kyong-Tai Kim

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Inhibition of Expression of the Circadian Clock GeneInternational journal of molecular sciences · 2023
    Article
  3. Article
  4. The molecular clockwork of mammalian cells.Seminars in cell & developmental biology · 2022
    Review
  5. Article
  6. HNRNP A1 Promotes Lung Cancer Cell Proliferation by ModulatingInternational journal of molecular sciences · 2021
    Article
  7. Functional analysis of a novelPlant signaling & behavior · 2021
    Article
  8. PTBP1 Positively Regulates the Translation of Circadian Clock Gene,International journal of molecular sciences · 2020
    Article
  9. Review
  10. Article
  11. Article
  12. hnRNP Q Regulates Internal Ribosome Entry Site-MediatedMolecular and cellular biology · 2019
    Article
  13. Circadian Posttranscriptional Regulatory Mechanisms in Mammals.Cold Spring Harbor perspectives in biology · 2018
    Review
  14. Review
  15. The Biological Roles of Translation Initiation Factor 3b.International journal of biological sciences · 2018
    Review
  16. AUF1 regulation of coding and noncoding RNA.Wiley interdisciplinary reviews. RNA · 2017
    Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Kyung-Ha LeeDepartment of Life Sciences, Pohang University of Science and Technology, San 31 Hyoja-dong, Pohang, Gyeongbuk 790-784, Republic of Korea, School of Interdisciplinary Bioscience and Bioengineering, Pohang University of Science and Technology, San 31 Hyoja-dong, Pohang, Gyeongbuk 790-784, Republic of Korea and Division of Integrative Biosciences and Biotechnology, Pohang University of Science and Technology, San 31 Hyoja-dong, Pohang, Gyeongbuk 790-784, Republic of Korea.
Sung-Hoon Kim
Hyo-Jin Kim
Wanil Kim
Hwa-Rim Lee
Youngseob Jung
Jung-Hyun Choi
Ka Young Hong
Sung Key Jang
Kyong-Tai Kim
Pohang University of Science and Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the present study, we investigated the 3' untranslated region (UTR) of the mouse core clock gene cryptochrome 1 (Cry1) at the post-transcriptional level, particularly its translational regulation. Interestingly, the 3'UTR of Cry1 mRNA decreased its mRNA levels but increased protein amounts. The 3'UTR is widely known to function as a cis-acting element of mRNA degradation. The 3'UTR also provides a binding site for microRNA and mainly suppresses translation of target mRNAs. We found that AU-rich element RNA binding protein 1 (AUF1) directly binds to the Cry1 3'UTR and regulates translation of Cry1 mRNA. AUF1 interacted with eukaryotic translation initiation factor 3 subunit B and also directly associated with ribosomal protein S3 or ribosomal protein S14, resulting in translation of Cry1 mRNA in a 3'UTR-dependent manner. Expression of cytoplasmic AUF1 and binding of AUF1 to the Cry1 3'UTR were parallel to the circadian CRY1 protein profile. Our results suggest that the 3'UTR of Cry1 is important for its rhythmic translation, and AUF1 bound to the 3'UTR facilitates interaction with the 5' end of mRNA by interacting with translation initiation factors and recruiting the 40S ribosomal subunit to initiate translation of Cry1 mRNA.

Indexed as

Gene Expression RegulationProtein BiosynthesisRNA Stability3' Untranslated RegionsAnimalsCircadian RhythmCryptochromesEukaryotic Initiation FactorsHEK293 CellsHeterogeneous-Nuclear Ribonucleoprotein DHeterogeneous Nuclear Ribonucleoprotein D0HumansMiceNIH 3T3 CellsRibosomal ProteinsRNA, Messenger3' Untranslated RegionsCry1 protein, mouseCryptochromesEukaryotic Initiation FactorsHeterogeneous-Nuclear Ribonucleoprotein DHeterogeneous Nuclear Ribonucleoprotein D0HNRNPD protein, humanHnrpd protein, mouseRibosomal ProteinsRNA, Messenger

Identifiers

PMID24423872
PMCPMC3973335
OpenAlexW2006389475

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.