Evidence map›Paper›PMID 24422557›Full record

ArticleJournal of the American Chemical Society2014

Dph3 is an electron donor for Dph1-Dph2 in the first step of eukaryotic diphthamide biosynthesis.

Min Dong, Xiaoyang Su, Boris Dzikovski, Emily E Dando, Xuling Zhu, Jintang Du, Jack H Freed, Hening Lin

Open access · bronzeAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 73 citations in OpenAlex.

  1. Review
  2. Article
  3. ACS omega · 2024
    Article
  4. Article
  5. Biomolecules · 2023
    Article
  6. Yeast geneMicrobial cell (Graz, Austria) · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. The BJournal of inorganic biochemistry · 2022
    Article
  13. Article
  14. Article
  15. Review
  16. Functions and Regulation of Translation Elongation Factors.Frontiers in molecular biosciences · 2021
    Review
  17. Article
  18. Article
  19. Article
  20. The asymmetric function of Dph1-Dph2 heterodimer in diphthamide biosynthesis.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Min DongDepartment of Chemistry and Chemical Biology, Cornell University , Ithaca, New York 14853, United States.
Xiaoyang Su
Boris Dzikovski
Emily E Dando
Xuling Zhu
Jintang Du
Jack H Freed
Hening Lin
Cornell University · US

Funding

TR&D 4 for ACERT, 2017-2021 funding periodP41GM103521 · NIGMS · CORNELL UNIVERSITY · PI FREED, JACK H · 2012 to 2021
$11.7M
Diphthamide biosynthesisR01GM088276 · NIGMS · CORNELL UNIVERSITY · PI LIN, HENING · 2009 to 2017
$2.5M
NIGMS NIH HHS P41 GM103521NIGMS NIH HHS P41-GM103521NIGMS NIH HHS R01 GM088276NIGMS NIH HHS R01GM088276
6 · The paper itself

Abstract

Diphthamide, the target of diphtheria toxin, is a unique posttranslational modification on translation elongation factor 2 (EF2) in archaea and eukaryotes. The biosynthesis of diphthamide was proposed to involve three steps. The first step is the transfer of the 3-amino-3-carboxypropyl group from S-adenosyl-l-methionine (SAM) to the histidine residue of EF2, forming a C-C bond. Previous genetic studies showed this step requires four proteins in eukaryotes, Dph1-Dph4. However, the exact molecular functions for the four proteins are unknown. Previous study showed that Pyrococcus horikoshii Dph2 (PhDph2), a novel iron-sulfur cluster-containing enzyme, forms a homodimer and is sufficient for the first step of diphthamide biosynthesis in vitro. Here we demonstrate by in vitro reconstitution that yeast Dph1 and Dph2 form a complex (Dph1-Dph2) that is equivalent to the homodimer of PhDph2 and is sufficient to catalyze the first step in vitro in the presence of dithionite as the reductant. We further demonstrate that yeast Dph3 (also known as KTI11), a CSL-type zinc finger protein, can bind iron and in the reduced state can serve as an electron donor to reduce the Fe-S cluster in Dph1-Dph2. Our study thus firmly establishes the functions for three of the proteins involved in eukaryotic diphthamide biosynthesis. For most radical SAM enzymes in bacteria, flavodoxins and flavodoxin reductases are believed to serve as electron donors for the Fe-S clusters. The finding that Dph3 is an electron donor for the Fe-S clusters in Dph1-Dph2 is thus interesting and opens up new avenues of research on electron transfer to Fe-S proteins in eukaryotic cells.

Indexed as

Archaeal ProteinsBiosynthetic PathwaysElectron TransportEscherichia coliHistidineIron-Sulfur ProteinsProtein BindingProtein MultimerizationPyrococcus horikoshiiRecombinant ProteinsRepressor ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsS-AdenosylmethionineTransfectionArchaeal ProteinsdiphthamideDph1 protein, S cerevisiaeDPH2 protein, S cerevisiaeHistidineIron-Sulfur ProteinsKTI11 protein, S cerevisiaeRecombinant ProteinsRepressor ProteinsSaccharomyces cerevisiae ProteinsS-Adenosylmethionine

Identifiers

PMID24422557
PMCPMC3985478
OpenAlexW2324850324

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.