Evidence map›Paper›PMID 24422196›Full record

ArticleAnnals of laboratory medicine2014

Assessment of the quantitative ability of AdvanSure TB/NTM real-time PCR in respiratory specimens by comparison with phenotypic methods.

Hyeyoung Lee, Kang Gyun Park, Gundong Lee, Joonhong Park, Yong-Gyu Park, Yeon-Joon Park

Abstract readComparative Study
In one paragraph

Article in Annals of laboratory medicine, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Molecular Diagnosis of Tuberculosis.Chonnam medical journal · 2018
    Review
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Hyeyoung LeeDepartment of Laboratory Medicine, School of Medicine, The Catholic University of Korea, Seoul, Korea.
Kang Gyun ParkDepartment of Laboratory Medicine, School of Medicine, The Catholic University of Korea, Seoul, Korea.
Gundong LeeDepartment of Laboratory Medicine, School of Medicine, The Catholic University of Korea, Seoul, Korea.
Joonhong ParkDepartment of Laboratory Medicine, School of Medicine, The Catholic University of Korea, Seoul, Korea.
Yong-Gyu ParkDepartment of Biostatistics, School of Medicine, The Catholic University of Korea, Seoul, Korea.
Yeon-Joon ParkDepartment of Laboratory Medicine, School of Medicine, The Catholic University of Korea, Seoul, Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Accurate quantification of mycobacterial load is important to evaluate disease severity and to monitor the course of treatment in tuberculosis (TB). We evaluated the quantitative capability of the AdvanSure TB/NTM real-time PCR kit (LG Life Science, Korea) to determine the cycle threshold (Ct) for mycobacterial burden. We retrospectively analyzed data from 108 patients whose respiratory specimens (sputums and bronchoalveolar lavage fluids) were positive for Mycobacterium tuberculosis complex (85 culture-positive and 23 culture-negative specimens). We compared Ct values with grades of acid-fast bacilli (AFB) staining, semi-quantitative colony count on solid medium, and time to positivity (TTP) in liquid and solid media. We also investigated the cutoff Ct value for predicting stain-positive status. Ct value showed significant reverse correlation with AFB staining grade (r s=-0.635, P<0.01). Ct value significantly decreased as the semi-quantitative counts on the solid medium increased (P<0.001), and the mean Ct value of each of the groups 1+, 2+, 3+, and 4+ were 29.0, 30.0, 27.1, and 25.5, respectively. A weak correlation between Ct value and TTP in liquid and solid media was observed (r s=0.468 and 0.365, respectively). A cutoff Ct value of <33.2 best predicted stain positivity, with a sensitivity of 95.0% and a specificity of 32.0%. Our findings suggest the potential use of AdvanSure TB/NTM real-time PCR kit for quantitatively determining bacterial burden, albeit with some enhancements.

Indexed as

Real-Time Polymerase Chain ReactionArea Under CurveBronchoalveolar Lavage FluidDNA, BacterialHumansMycobacterium tuberculosisPhenotypeReagent Kits, DiagnosticRetrospective StudiesROC CurveSensitivity and SpecificitySputumTuberculosisDNA, BacterialReagent Kits, DiagnosticCycle thresholdMycobacterium tuberculosisQuantification

Identifiers

PMID24422196
PMCPMC3885773

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.