Evidence map›Paper›PMID 24421384›Full record

ArticleMolecular and cellular biology2014

The conserved PBAF nucleosome-remodeling complex mediates the response to stress in Caenorhabditis elegans.

Aleksandra Kuzmanov, Evguenia I Karina, Natalia V Kirienko, David S Fay

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.5field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Chromatin: the old and young of it.Frontiers in molecular biosciences · 2023
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Aleksandra KuzmanovDepartment of Molecular Biology, College of Agriculture and Natural Resources, University of Wyoming, Laramie, Wyoming, USA.
Evguenia I Karina
Natalia V Kirienko
David S Fay
University of Wyoming · US

Funding

Wyoming INBRE Phase 4- Equipment Supplement for x-ray diffractometer for Center for Advanced Scientific InstrumentationP20GM103432 · NIGMS · UNIVERSITY OF WYOMING · PI Robert Scott Seville · 2012 to 2026
$56.8M
Developmental Functions of Rb family proteinsR01GM066868 · NIGMS · UNIVERSITY OF WYOMING · PI FAY, DAVID S · 2004 to 2019
$4.1M
NIGMS NIH HHS P20 GM103432NIGMS NIH HHS R01 GM066868NIGMS NIH HHS R01GM066868-06
6 · The paper itself

Abstract

To adapt to stress, cells must undergo major changes in their gene expression profiles. We have previously described a largely uncharacterized stress response pathway in Caenorhabditis elegans that acts through an evolutionarily conserved motif, termed ESRE, for ethanol and stress response element. We characterize here the requirements for ESRE gene expression and show that the ESRE network is regulated by a conserved SWI/SNF family nucleosome remodeling complex termed PBAF. Depletion of PBAF subunits SWSN-7/BAF200 and PBRM-1/BAF180 results in decreased expression of ESRE genes and increased sensitivity to thermal stress. When overexpressed, SWSN-7/BAF200 and PBRM-1/BAF180 led to increased ESRE transcription, enhanced thermotolerance, and induction of a nuclear ESRE-binding activity. Our data support a model in which PBAF is recruited by an ESRE-binding protein to genomic ESRE sites. We also show that the closely related SWI/SNF complex, BAF, which regulates stress induction through DAF-16/FOXO, does not contribute to ESRE gene expression or bind directly to ESRE sites. To our knowledge, this is the first report demonstrating direct and specific regulation of a stress response network by the PBAF nucleosome-remodeling complex in vivo in metazoa. In addition, we show that PBAF cooperates with the histone demethylase, JMJC-1/NO66, to promote expression of ESRE genes following stress.

Indexed as

AnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsChromosomal Proteins, Non-HistoneConserved SequenceForkhead Transcription FactorsHistone DemethylasesHot TemperatureNuclear ProteinsNucleosomesProtein BindingStress, PhysiologicalTranscription FactorsTranscription, GeneticCaenorhabditis elegans ProteinsChromosomal Proteins, Non-Histonedaf-16 protein, C elegansForkhead Transcription FactorsHistone DemethylasesNuclear ProteinsNucleosomesSWI-SNF-B chromatin-remodeling complexTranscription Factors

Identifiers

PMID24421384
PMCPMC3958046
OpenAlexW2118616647

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.