Evidence map›Paper›PMID 24419614›Full record

ArticleActa crystallographica. Section F, Structural biology communications2014

Structure of Mycobacterium tuberculosis nucleoside diphosphate kinase R80N mutant in complex with citrate.

Florian Georgescauld, Lucile Moynié, Johann Habersetzer, Alain Dautant

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Structure, Folding and Stability of Nucleoside Diphosphate Kinases.International journal of molecular sciences · 2020
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Florian GeorgescauldInstitut de Biochimie et de Génétique Cellulaires, UMR 5095, CNRS, 1 Rue Camille Saint-Saëns, 33077 Bordeaux, France.
Lucile MoyniéInstitut de Biochimie et de Génétique Cellulaires, UMR 5095, CNRS, 1 Rue Camille Saint-Saëns, 33077 Bordeaux, France.
Johann HabersetzerInstitut de Biochimie et de Génétique Cellulaires, UMR 5095, CNRS, 1 Rue Camille Saint-Saëns, 33077 Bordeaux, France.
Alain DautantInstitut de Biochimie et de Génétique Cellulaires, UMR 5095, CNRS, 1 Rue Camille Saint-Saëns, 33077 Bordeaux, France.
Centre National de la Recherche Scientifique · FRInstitut de Biochimie et Génétique Cellulaires · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The crystal structure of the wild-type nucleoside diphosphate kinase from Mycobacterium tuberculosis at 2.6 Å resolution revealed that the intersubunit salt bridge Arg80-Asp93 contributes to the thermal stability of the hexamer (Tm = 76°C). On mutating Asp93 to Asn to break the salt bridge, the thermal stability dramatically decreased by 27.6°C. Here, on mutating Arg80 to Asn, the thermal stability also significantly decreased by 8.0°C. In the X-ray structure of the R80N mutant solved at 1.9 Å resolution the salt bridge was replaced by intersubunit hydrogen bonds that contribute to the thermal stability of the hexamer. A citrate anion from the crystallization buffer was bound at the bottom of the nucleotide-binding site via electrostatic and hydrogen-bonding interactions with six conserved residues involved in nucleotide binding. Structural analysis shows that the citrate is present at the location of the nucleotide phosphate groups.

Indexed as

Amino Acid SubstitutionCitric AcidCrystallography, X-RayMutant ProteinsMycobacterium tuberculosisNucleoside-Diphosphate KinaseProtein Structure, SecondaryProtein SubunitsStatic ElectricityCitric AcidMutant ProteinsNucleoside-Diphosphate KinaseProtein SubunitsMycobacterium tuberculosisnucleoside diphosphate kinasethermal stability

Identifiers

PMID24419614
PMCPMC3943099
OpenAlexW1993920866

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.