Evidence map›Paper›PMID 24419391›Full record

ArticleActa crystallographica. Section D, Biological crystallography2014

Three-dimensional structure of a Streptomyces sviceus GNAT acetyltransferase with similarity to the C-terminal domain of the human GH84 O-GlcNAcase.

Yuan He, Christian Roth, Johan P Turkenburg, Gideon J Davies

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Biological crystallography, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
  3. Cells · 2022
    Review
  4. Article
  5. Review
  6. Article
  7. Complex Crystal Structure Determination andFrontiers in cell and developmental biology · 2021
    Article
  8. Molecular Interrogation to Crack the Case of O-GlcNAc.Chemistry (Weinheim an der Bergstrasse, Germany) · 2020
    Review
  9. Article
  10. O-GlcNAcylation in immunity and inflammation: An intricate system (Review).International journal of molecular medicine · 2019
    Review
  11. Review
  12. Review
  13. Structural studies of a surface-entropy reduction mutant of O-GlcNAcase.Acta crystallographica. Section D, Structural biology · 2019
    Article
  14. Review
  15. O-Linked β-Clinical science (London, England : 1979) · 2018
    Review
  16. O-GlcNAcylation and neurodegeneration.Brain research bulletin · 2017
    Review
  17. Article
  18. Article
  19. Article
  20. You are what you eat: O-linked N-acetylglucosamine in disease, development and epigenetics.Current opinion in clinical nutrition and metabolic care · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Yuan HeCollege of Chemistry and Materials Science, Northwest University, Xi'an 710069, People's Republic of China.
Christian RothYork Structural Biology Laboratory, Department of Chemistry, The University of York, York YO10 5DD, England.
Johan P TurkenburgYork Structural Biology Laboratory, Department of Chemistry, The University of York, York YO10 5DD, England.
Gideon J DaviesYork Structural Biology Laboratory, Department of Chemistry, The University of York, York YO10 5DD, England.
University of York · GBNorthwest University · CN

Funding

Biotechnology and Biological Sciences Research Council BB/F007124/1Biotechnology and Biological Sciences Research Council BB/K003836/1
6 · The paper itself

Abstract

The mammalian O-GlcNAc hydrolysing enzyme O-GlcNAcase (OGA) is a multi-domain protein with glycoside hydrolase activity in the N-terminus and with a C-terminal domain that has low sequence similarity to known acetyltransferases, prompting speculation, albeit controversial, that the C-terminal domain may function as a histone acetyltransferase (HAT). There are currently scarce data available regarding the structure and function of this C-terminal region. Here, a bacterial homologue of the human OGA C-terminal domain, an acetyltransferase protein (accession No. ZP_05014886) from Streptomyces sviceus (SsAT), was cloned and its crystal structure was solved to high resolution. The structure reveals a conserved protein core that has considerable structural homology to the acetyl-CoA (AcCoA) binding site of GCN5-related acetyltransferases (GNATs). Calorimetric data further confirm that SsAT is indeed able to bind AcCoA in solution with micromolar affinity. Detailed structural analysis provided insight into the binding of AcCoA. An acceptor-binding cavity was identified, indicating that the physiological substrate of SsAT may be a small molecule. Consistent with recently published work, the SsAT structure further questions a HAT function for the human OGA domain.

Indexed as

Acetyl Coenzyme AAcetyltransferasesbeta-N-AcetylhexosaminidasesBinding SitesCrystallography, X-RayHumansModels, MolecularProtein BindingProtein Structure, TertiaryStreptomycesAcetyl Coenzyme AAcetyltransferasesbeta-N-Acetylhexosaminidaseshexosaminidase Cacetyl-CoAacetyltransferasesGCN5GNATO-GlcNAc

Identifiers

PMID24419391
PMCPMC3919268
OpenAlexW2098197423

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.