Evidence map›Paper›PMID 24419156›Full record

ArticleScientific reports2014

Affinity improvement of a therapeutic antibody to methamphetamine and amphetamine through structure-based antibody engineering.

Shraddha Thakkar, Nisha Nanaware-Kharade, Reha Celikel, Eric C Peterson, Kottayil I Varughese

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Antibody H3 Structure Prediction.Computational and structural biotechnology journal · 2017
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Shraddha ThakkarDepartment of Physiology and Biophysics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA.
Nisha Nanaware-KharadeDepartment of Pharmacology and Toxicology, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA.
Reha CelikelDepartment of Physiology and Biophysics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA.
Eric C Peterson1] Department of Pharmacology and Toxicology, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA [2].
Kottayil I Varughese1] Department of Physiology and Biophysics, College of Medicine, University of Arkansas for Medical Sciences, Little Rock, Arkansas, USA [2].
University of Arkansas for Medical Sciences · US

Funding

Understanding Hesitant AdoptersP20GM103429 · NIGMS · UNIV OF ARKANSAS FOR MED SCIS · PI JERRY WARE · 2012 to 2026
$60.9M
VIRULENCE MECHANISMS IN ESCHERICHIA COLIP20RR016460 · NCRR · UNIV OF ARKANSAS FOR MED SCIS · PI HENSLEY, LORI · 2001 to 2011
$33.1M
Antibody-nanoparticle conjugates for the treatment of methamphetamine abuseR01DA026423 · NIDA · UNIV OF ARKANSAS FOR MED SCIS · PI PETERSON, ERIC C · 2009 to 2012
$1.5M
Single Chain Antibody Medications for(+)METH AbuseF32DA018039 · NIDA · UNIV OF ARKANSAS FOR MED SCIS · PI PETERSON, ERIC C · 2004 to 2006
$147k
NCRR NIH HHS 5P20RR016460-11NCRR NIH HHS P20 RR016460NIDA NIH HHS F32 DA018039NIDA NIH HHS R01 DA026423NIGMS NIH HHS 8 P20 GM103429-11NIGMS NIH HHS P20 GM103429
6 · The paper itself

Abstract

Methamphetamine (METH) abuse is a worldwide threat, without any FDA approved medications. Anti-METH IgGs and single chain fragments (scFvs) have shown efficacy in preclinical studies. Here we report affinity enhancement of an anti-METH scFv for METH and its active metabolite amphetamine (AMP), through the introduction of point mutations, rationally designed to optimize the shape and hydrophobicity of the antibody binding pocket. The binding affinity was measured using saturation binding technique. The mutant scFv-S93T showed 3.1 fold enhancement in affinity for METH and 26 fold for AMP. The scFv-I37M and scFv-Y34M mutants showed enhancement of 94, and 8 fold for AMP, respectively. Structural analysis of scFv-S93T:METH revealed that the substitution of Ser residue by Thr caused the expulsion of a water molecule from the cavity, creating a more hydrophobic environment for the binding that dramatically increases the affinities for METH and AMP.

Indexed as

Antibody AffinityAmino Acid SequenceAmphetamineAntibodies, MonoclonalBinding SitesHydrophobic and Hydrophilic InteractionsMethamphetamineModels, MolecularMolecular ConformationMolecular Sequence DataMutationProtein BindingProtein EngineeringSingle-Chain AntibodiesStructure-Activity RelationshipAmphetamineAntibodies, MonoclonalMethamphetamineSingle-Chain Antibodies

Identifiers

PMID24419156
PMCPMC4070344
OpenAlexW1967644381

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.