Evidence map›Paper›PMID 24418910›Full record

ArticleOrganogenesis2014

Metakaryotic stem cell nuclei use pangenomic dsRNA/DNA intermediates in genome replication and segregation.

William G Thilly, Elena V Gostjeva, Vera V Koledova, Lawrence R Zukerberg, Daniel Chung, Janna N Fomina, Firouz Darroudi, B David Stollar

Open access · hybridAbstract read
In one paragraph

Article in Organogenesis, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 10 citations in OpenAlex.

  1. Split hand/foot malformation genetics supports the chromosome 7 copy segregation mechanism for human limb development.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016
    Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

William G ThillyLaboratory in Metakaryotic Biology; Department of Biological Engineering; Massachusetts Institute of Technology; Cambridge, MA USA.
Elena V GostjevaLaboratory in Metakaryotic Biology; Department of Biological Engineering; Massachusetts Institute of Technology; Cambridge, MA USA.
Vera V KoledovaLaboratory in Metakaryotic Biology; Department of Biological Engineering; Massachusetts Institute of Technology; Cambridge, MA USA.
Lawrence R ZukerbergDepartment of Pathology; Massachusetts General Hospital; Boston, MA USA.
Daniel ChungGastorointestinal Unit; Massachusetts General Hospital; Boston, MA USA.
Janna N FominaDepartment of Toxicogenetics; Leiden University Medical Centre; Leiden, The Netherlands.
Firouz DarroudiDepartment of Toxicogenetics; Leiden University Medical Centre; Leiden, The Netherlands.
B David StollarDepartment of Developmental, Molecular and Chemical Biology; Tufts University School of Medicine; Boston, MA USA.
Massachusetts Institute of Technology · USLeiden University Medical Center · NLMassachusetts General Hospital · USInstitut thématique Génétique, génomique et bioinformatique · FR

Funding

Tissue and Pathology ResourcesP50CA127003 · NCI · DANA-FARBER CANCER INST · PI EL-BARDEESY, NABEEL, SELLERS, WILLIAM R · 2007 to 2023
$33.2M
NCI NIH HHS P50 CA127003
6 · The paper itself

Abstract

Bell shaped nuclei of metakaryotic cells double their DNA content during and after symmetric and asymmetric amitotic fissions rather than in the separate, pre-mitotic S-phase of eukaryotic cells. A parsimonious hypothesis was tested that the two anti-parallel strands of each chromatid DNA helix were first segregated as ssDNA-containing complexes into sister nuclei then copied to recreate a dsDNA genome. Metakaryotic nuclei that were treated during amitosis with RNase A and stained with acridine orange or fluorescent antibody to ssDNA revealed large amounts of ssDNA. Without RNase treatment metakaryotic nuclei in amitosis stained strongly with an antibody complex specific to dsRNA/DNA. Images of amitotic figures co-stained with dsRNA/DNA antibody and DAPI indicated that the entire interphase dsDNA genome (B-form helices) was transformed into two dsRNA/DNA genomes (A-form helices) that were segregated in the daughter cell nuclei then retransformed into dsDNA. As this process segregates DNA strands of opposite polarity in sister cells it hypothetically offers a sequential switching mechanism within the diverging stem cell lineages of development.

Indexed as

Chromosome SegregationDNA ReplicationGenomeCell Line, TumorCell NucleusDNAFluorescein-5-isothiocyanateHumansImmunohistochemistryKaryotypeRNAStem CellsDNAFluorescein-5-isothiocyanateRNAamitosisdevelopmentdifferentiationdsRNA/DNAgenome replicationmetakaryoticstem cells

Identifiers

PMID24418910
PMCPMC4049894
OpenAlexW2101276711

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.