Evidence map›Paper›PMID 24418890›Full record

ArticleRNA biology2013

Screening of small molecules affecting mammalian P-body assembly uncovers links with diverse intracellular processes and organelle physiology.

Javier P Martínez, Gemma Pérez-Vilaró, Yazh Muthukumar, Nicoletta Scheller, Tatjana Hirsch, Randi Diestel, Heinrich Steinmetz, Rolf Jansen, Ronald Frank, Florenz Sasse and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.1field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Javier P MartínezInfection Biology Group; Department of Experimental and Health Sciences; Universitat Pompeu Fabra; Barcelona, Spain.
Gemma Pérez-VilaróMolecular Virology Group; Department of Experimental and Health Sciences; Universitat Pompeu Fabra; Barcelona, Spain.
Yazh MuthukumarDepartment of Chemical Biology; Helmholtz Centre for Infection Research; Braunschweig, Germany.
Nicoletta SchellerMolecular Virology Group; Department of Experimental and Health Sciences; Universitat Pompeu Fabra; Barcelona, Spain.
Tatjana HirschDepartment of Chemical Biology; Helmholtz Centre for Infection Research; Braunschweig, Germany.
Randi DiestelDepartment of Chemical Biology; Helmholtz Centre for Infection Research; Braunschweig, Germany.
Heinrich SteinmetzDepartment of Microbial Drugs; Helmholtz Centre for Infection Research; Braunschweig, Germany.
Rolf JansenDepartment of Microbial Drugs; Helmholtz Centre for Infection Research; Braunschweig, Germany.
Ronald FrankDepartment of Chemical Biology; Helmholtz Centre for Infection Research; Braunschweig, Germany.
Florenz SasseDepartment of Chemical Biology; Helmholtz Centre for Infection Research; Braunschweig, Germany.
Andreas MeyerhansInfection Biology Group; Department of Experimental and Health Sciences; Universitat Pompeu Fabra; Barcelona, Spain; Institució Catalana de Recerca i Estudis Avançats (ICREA); Barcelona, Spain.
Juana DíezMolecular Virology Group; Department of Experimental and Health Sciences; Universitat Pompeu Fabra; Barcelona, Spain.
Helmholtz Centre for Infection Research · DEPompeu Fabra University · ESBiology of Infection · FRInstitució Catalana de Recerca i Estudis Avançats · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Processing bodies (P-bodies) are cytoplasmatic mRNP granules containing non-translating mRNAs and proteins from the mRNA decay and silencing machineries. The mechanism of P-body assembly has been typically addressed by depleting P-body components. Here we apply a complementary approach and establish an automated cell-based assay platform to screen for molecules affecting P-body assembly. From a unique library of compounds derived from myxobacteria, 30 specifically inhibited P-body assembly. Gephyronic acid A (GA), a eukaryotic protein synthesis inhibitor, showed the strongest effect. GA also inhibited, under stress conditions, phosphorylation of eIF2α and stress granule formation. Other hits uncovered interesting novel links between P-body assembly, lipid metabolism, and internal organelle physiology. The obtained results provide a chemical toolbox to manipulate P-body assembly and function.

Indexed as

Drug DiscoverySmall Molecule LibrariesCell Line, TumorCycloheximideCytoplasmic GranulesEukaryotic Initiation Factor-2Fatty Acids, MonounsaturatedHeLa CellsHumansLipid MetabolismMyxococcalesPhosphorylationPuromycinRibonucleoproteins, Small CytoplasmicRNA StabilityCycloheximideEukaryotic Initiation Factor-2Fatty Acids, Monounsaturatedgephyronic acidPuromycinRibonucleoproteins, Small CytoplasmicSmall Molecule LibrarieseIF2αgephyronic acid Ainhibitorsmyxobacterial metabolitesP-body assemblyprocessing bodiesstress granules

Identifiers

PMID24418890
PMCPMC3907476
OpenAlexW2099871947

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.