Evidence map›Paper›PMID 24417450›Full record

ArticleMolecular microbiology2014

Fitness costs of rifampicin resistance in Mycobacterium tuberculosis are amplified under conditions of nutrient starvation and compensated by mutation in the β' subunit of RNA polymerase.

Taeksun Song, Yumi Park, Isdore Chola Shamputa, Sunghwa Seo, Sun Young Lee, Han-Seung Jeon, Hongjo Choi, Myungsun Lee, Richard J Glynne, S Whitney Barnes and 12 more

Abstract read
In one paragraph

Article in Molecular microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Subpopulations in clinical samples ofJAC-antimicrobial resistance · 2025
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Prevalence of antibiotic-resistantFood science and biotechnology · 2024
    Article
  11. Article
  12. Grow now, pay later: When should a bacterium go into debt?Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Genomic Characterization of Drug-ResistantAntibiotics (Basel, Switzerland) · 2023
    Article
  18. Article
  19. Molecular Analysis of Anti-Tuberculosis Drug Resistance ofAntibiotics (Basel, Switzerland) · 2023
    Article
  20. Article

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Taeksun SongInternational Tuberculosis Research Center, Changwon, South Korea.
Yumi Park
Isdore Chola Shamputa
Sunghwa Seo
Sun Young Lee
Han-Seung Jeon
Hongjo Choi
Myungsun Lee
Richard J Glynne
S Whitney Barnes
John R Walker
Serge Batalov
Karina Yusim
Shihai Feng
Chang-Shung Tung
James Theiler
Laura E Via
Helena I M Boshoff
Katsuhiko S Murakami
Bette Korber
Clifton E Barry
Sang-Nae Cho

Funding

Exploring the metabolism of non-replicating and drug-resistant TBZIAAI000783 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI BARRY, CLIFTON · 2009 to 2017
$8.2M
International Research in Korea: Clinical Studies of Drug-Resistant TuberculosisZIAAI001067 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI BARRY, CLIFTON · 2009 to 2017
$6.9M
X-Ray Crystallographic Studies of Multi-Subunit Nucleic Acid PolymerasesR01GM087350 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI MURAKAMI, KATSUHIKO · 2010 to 2018
$2.6M
International Research in Korea: Clinical Studies of Drug-Resistant TuberculosisZ01AI001067 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI BARRY, CLIFTON · 2008 to 2008
$1.2M
Intramural NIH HHS Z01 AI001067NIGMS NIH HHS GM087350-A1NIGMS NIH HHS R01 GM087350
6 · The paper itself

Abstract

Rifampicin resistance, a defining attribute of multidrug-resistant tuberculosis, is conferred by mutations in the β subunit of RNA polymerase. Sequencing of rifampicin-resistant (RIF-R) clinical isolates of Mycobacterium tuberculosis revealed, in addition to RIF-R mutations, enrichment of potential compensatory mutations around the double-psi β-barrel domain of the β' subunit comprising the catalytic site and the exit tunnel for newly synthesized RNA. Sequential introduction of the resistance allele followed by the compensatory allele in isogenic Mycobacterium smegmatis showed that these mutations respectively caused and compensated a starvation enhanced growth defect by altering RNA polymerase activity. While specific combinations of resistance and compensatory alleles converged in divergent lineages, other combinations recurred among related isolates suggesting transmission of compensated RIF-R strains. These findings suggest nutrient poor growth conditions impose larger selective pressure on RIF-R organisms that results in the selection of compensatory mutations in a domain involved in catalysis and starvation control of RNA polymerase transcription.

Indexed as

Drug Resistance, BacterialMutation, MissenseAntitubercular AgentsDNA-Directed RNA PolymerasesMycobacterium smegmatisMycobacterium tuberculosisRifampinAntitubercular AgentsDNA-Directed RNA PolymerasesRifampinRNA polymerase beta subunit

Identifiers

PMID24417450
PMCPMC3951610

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.