Evidence map›Paper›PMID 24416416›Full record

ArticlePloS one2014

Comparative genome analysis of Campylobacter fetus subspecies revealed horizontally acquired genetic elements important for virulence and niche specificity.

Sabine Kienesberger, Hanna Sprenger, Stella Wolfgruber, Bettina Halwachs, Gerhard G Thallinger, Guillermo I Perez-Perez, Martin J Blaser, Ellen L Zechner, Gregor Gorkiewicz

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
7.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
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  8. Polish journal of microbiology · 2021
    Article
  9. Article
  10. Evaluation of intracellular survival ofIranian journal of veterinary research · 2021
    Article
  11. Article
  12. Review
  13. Identification of Campylobacter fetus subsp. venerealis virulence genes in cervical mucus from cows.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2019
    Article
  14. Polish journal of microbiology · 2019
    Article
  15. Living in Cold Blood:Frontiers in microbiology · 2019
    Review
  16. Article
  17. Fic Proteins ofFrontiers in microbiology · 2017
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Sabine KienesbergerInstitute of Molecular Biosciences, University of Graz, Graz, Austria ; Department of Medicine, NYU Langone Medical Center, New York, New York, United States of America ; Institute of Pathology, Medical University of Graz, Graz, Austria.
Hanna SprengerInstitute of Molecular Biosciences, University of Graz, Graz, Austria ; Institute of Pathology, Medical University of Graz, Graz, Austria.
Stella WolfgruberInstitute of Molecular Biosciences, University of Graz, Graz, Austria.
Bettina HalwachsInstitute for Genomics and Bioinformatics, Graz University of Technology, Graz, Austria ; Core Facility Bioinformatics, Austrian Centre of Industrial Biotechnology, Graz, Austria.
Gerhard G ThallingerInstitute for Genomics and Bioinformatics, Graz University of Technology, Graz, Austria ; Core Facility Bioinformatics, Austrian Centre of Industrial Biotechnology, Graz, Austria.
Guillermo I Perez-PerezDepartment of Medicine, NYU Langone Medical Center, New York, New York, United States of America ; Department of Microbiology, NYU Langone Medical Center, New York, New York, United States of America.
Martin J BlaserDepartment of Medicine, NYU Langone Medical Center, New York, New York, United States of America ; Department of Microbiology, NYU Langone Medical Center, New York, New York, United States of America ; Medical Service, VA New York Harbor Healthcare System, New York, New York, United States of America.
Ellen L ZechnerInstitute of Molecular Biosciences, University of Graz, Graz, Austria.
Gregor GorkiewiczInstitute of Pathology, Medical University of Graz, Graz, Austria.
University of Graz · ATGraz University of Technology · ATMedical University of Graz · ATNYU Langone Health · USVA NY Harbor Healthcare System · US

Funding

MATHEMATICAL MODELS OF H PYLORI GASTRIC COLONIZATIONR01GM063270 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BLASER, MARTIN J · 2000 to 2013
$3.1M
Austrian Science Fund FWF P 20479NIGMS NIH HHS GM63270NIGMS NIH HHS R01 GM063270
6 · The paper itself

Abstract

Campylobacter fetus are important animal and human pathogens and the two major subspecies differ strikingly in pathogenicity. C. fetus subsp. venerealis is highly niche-adapted, mainly infecting the genital tract of cattle. C. fetus subsp. fetus has a wider host-range, colonizing the genital- and intestinal-tract of animals and humans. We report the complete genomic sequence of C. fetus subsp. venerealis 84-112 and comparisons to the genome of C. fetus subsp. fetus 82-40. Functional analysis of genes predicted to be involved in C. fetus virulence was performed. The two subspecies are highly syntenic with 92% sequence identity but C. fetus subsp. venerealis has a larger genome and an extra-chromosomal element. Aside from apparent gene transfer agents and hypothetical proteins, the unique genes in both subspecies comprise two known functional groups: lipopolysaccharide production, and type IV secretion machineries. Analyses of lipopolysaccharide-biosynthesis genes in C. fetus isolates showed linkage to particular pathotypes, and mutational inactivation demonstrated their roles in regulating virulence and host range. The comparative analysis presented here broadens knowledge of the genomic basis of C. fetus pathogenesis and host specificity. It further highlights the importance of surface-exposed structures to C. fetus pathogenicity and demonstrates how evolutionary forces optimize the fitness and host-adaptation of these pathogens.

Indexed as

Genome, BacterialAnimalsBacterial Secretion SystemsBase SequenceCampylobacter fetusCampylobacter InfectionsCattleChromosome MappingChromosomes, BacterialDNA, BacterialGene Transfer, HorizontalHost SpecificityHumansLipopolysaccharidesMolecular Sequence DataSequence Analysis, DNABacterial Secretion SystemsDNA, BacterialLipopolysaccharides

Identifiers

PMID24416416
PMCPMC3887049
OpenAlexW2056886635

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.