Evidence map›Paper›PMID 24416304›Full record

ArticlePloS one2014

Mutation induced conformational changes in genomic DNA from cancerous K562 cells influence drug-DNA binding modes.

Debjani Ghosh, Subrata Kumar Dey, Chabita Saha

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Molecular Spectroscopic Markers of DNA Damage.Molecules (Basel, Switzerland) · 2020
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Debjani GhoshSchool of Biotechnology and Biological Sciences, West Bengal University of Technology, Salt Lake, Kolkata, India.
Subrata Kumar DeySchool of Biotechnology and Biological Sciences, West Bengal University of Technology, Salt Lake, Kolkata, India.
Chabita SahaSchool of Biotechnology and Biological Sciences, West Bengal University of Technology, Salt Lake, Kolkata, India.
Maulana Abul Kalam Azad University of Technology, West Bengal · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Normal human genomic DNA (N-DNA) and mutated DNA (M-DNA) from K562 leukemic cells show different thermodynamic properties and binding affinities on interaction with anticancer drugs; adriamycin (ADR) and daunomycin (DNM). Isothermal calorimetric thermograms representing titration of ADR/DNM with N-DNA and M-DNA on analysis best fitted with sequential model of four and three events respectively. From Raman spectroscopy it has been identified that M-DNA is partially transformed to A form owing to mutations and N-DNA on binding of drugs too undergoes transition to A form of DNA. A correlation of thermodynamic contribution and structural data reveal the presence of different binding events in drug and DNA interactions. These events are assumed to be representative of minor groove complexation, reorientation of the drug in the complex, DNA deformation to accommodate the drugs and finally intercalation. Dynamic light scattering and zeta potential data also support differences in structure and mode of binding of N and M DNA. This study highlights that mutations can manifest structural changes in DNA, which may influence the binding efficacy of the drugs. New generation of drugs can be designed which recognize the difference in DNA structure in the cancerous cells instead of their biochemical manifestation.

Indexed as

MutationNucleic Acid ConformationAntineoplastic AgentsDaunorubicinDNADoxorubicinGenome, HumanHumansK562 CellsModels, MolecularThermodynamicsAntineoplastic AgentsDaunorubicinDNADoxorubicin

Identifiers

PMID24416304
PMCPMC3885628
OpenAlexW2020898584

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.