Evidence map›Paper›PMID 24416237›Full record

ArticlePloS one2014

Colorectal tumors from APC*I1307K carriers principally harbor somatic APC mutations outside the A8 tract.

Peter Zauber, Timothy Bishop, Claire Taylor, Marlene Sabbath-Solitare, Stephen Marotta, Ian Tomlinson

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Journal of medical genetics · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Peter ZauberDepartment of Medicine, Saint Barnabas Medical Center, Livingston, New Jersey, United States of America.
Timothy BishopSection of Epidemiology and Biostatistics, Leeds Institute of Molecular Medicine, University of Leeds, Leeds, United Kingdom.
Claire TaylorCancer Research UK Genomics Facility, Leeds Institute of Molecular Medicine, University of Leeds, Leeds, United Kingdom.
Marlene Sabbath-SolitareDepartment of Pathology, Saint Barnabas Medical Center, Livingston, New Jersey, United States of America.
Stephen MarottaDepartment of Pathology, Saint Barnabas Medical Center, Livingston, New Jersey, United States of America.
Ian TomlinsonMolecular and Population Genetics, Wellcome Trust Centre for Human Genetics, Oxford, United Kingdom.
Saint Barnabas Medical Center · USCentre for Human Genetics · GBGenomics (United Kingdom) · GBUniversity of Leeds · GB

Funding

Cancer Research UK 10589Cancer Research UK C588/A10589Wellcome Trust 090532
6 · The paper itself

Abstract

purposeAPC*I1307K (c.3920T>A) is an inherited variant associated with colorectal tumour risk found almost exclusively in those of Ashkenazi Jewish ancestry. A single nucleotide substitution creates an oligo-adenine tract (A8) that appears to be inherently prone to further mis-pairing and slippage. The reported multiple tumor phenotype of carriers is not easily reconciled with molecular and population genetics data. We postulated that some c.3920T>A carriers with multiple adenomas have other unidentified APC germ line or somatic mutations.

methodsDNA from 82 colonic tumours and accompanying normal tissue collected from 29 carriers with multiple colorectal tumors was directly sequenced between codons 716 and 1604. We also assessed APC gene loss of heterozygosity.

resultsOne patient (3.4%) was found to have an additional APC germ line mutation. Twenty-five of the tumours showed no significant somatic molecular change, 36 showed one change, 20 showed two, and one tumour showed more than 2 changes. Our data suggest a correlation between advancing histology and fewer beta-catenin binding sites remaining in the mutant proteins.

conclusionsThere were no other common germ line variants identified within the region of the APC gene examined, suggesting that any effect from this region on tumour production is attributable to the c.3920T>A allele. Our findings further suggest the only somatic genetic change clearly attributable to the c.3920T>A mutation is the c.3924_3925insA.

Indexed as

MutationOligodeoxyribonucleotidesAdenomatous Polyposis Coli ProteinAllelesCodonColorectal NeoplasmsFemaleGenetic Predisposition to DiseaseGerm-Line MutationHumansMaleMiddle AgedAdenomatous Polyposis Coli ProteinAPC protein, humanCodonoligodeoxyadenylic acidOligodeoxyribonucleotides

Identifiers

PMID24416237
PMCPMC3886998
OpenAlexW2036105030

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.