Evidence map›Paper›PMID 24416162›Full record

ArticlePloS one2014

Impact of acute metal stress in Saccharomyces cerevisiae.

Dagmar Hosiner, Susanne Gerber, Hella Lichtenberg-Fraté, Walter Glaser, Christoph Schüller, Edda Klipp

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
5.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 95 citations in OpenAlex.

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  11. The HMGB ProteinBiomolecules · 2021
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  12. Article
  13. Article
  14. Review
  15. Article
  16. Fungal-Metal Interactions: A Review of Toxicity and Homeostasis.Journal of fungi (Basel, Switzerland) · 2021
    Review
  17. Article
  18. Article
  19. RoboCOP: Multivariate State Space Model Integrating Epigenomic Accessibility Data to Elucidate Genome-Wide Chromatin Occupancy.Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005- ) · 2020
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Dagmar HosinerDepartment of Applied Genetics and Cell Biology, UFT-Campus Tulln, University of Natural Resources and Life Sciences (BOKU), Vienna, Austria.
Susanne GerberAG Computational Time Series Analysis, Institute of Computational Science, Faculty of Informatics, Università della Svizzera italiana, Lugano, Switzerland ; Theoretical Biophysics Humboldt-Universität zu Berlin, Berlin, Germany.
Hella Lichtenberg-FratéAG Molekulare Bioenergetik, IZMB, Rheinische-Friedrich-Wilhelms-Universität, Bonn, Germany.
Walter GlaserInstitute of Medical Biochemistry, MFPL, Medical University of Vienna, Vienna, Austria.
Christoph SchüllerDepartment of Applied Genetics and Cell Biology, UFT-Campus Tulln, University of Natural Resources and Life Sciences (BOKU), Vienna, Austria.
Edda KlippTheoretical Biophysics Humboldt-Universität zu Berlin, Berlin, Germany.
BOKU University · ATHumboldt-Universität zu Berlin · DEMedical University of Vienna · ATUniversity of Bonn · DE

Funding

Austrian Science Fund FWF P 23355
6 · The paper itself

Abstract

Although considered as essential cofactors for a variety of enzymatic reactions and for important structural and functional roles in cell metabolism, metals at high concentrations are potent toxic pollutants and pose complex biochemical problems for cells. We report results of single dose acute toxicity testing in the model organism S. cerevisiae. The effects of moderate toxic concentrations of 10 different human health relevant metals, Ag(+), Al(3+), As(3+), Cd(2+), Co(2+), Hg(2+), Mn(2+), Ni(2+), V(3+), and Zn(2+), following short-term exposure were analyzed by transcription profiling to provide the identification of early-on target genes or pathways. In contrast to common acute toxicity tests where defined endpoints are monitored we focused on the entire genomic response. We provide evidence that the induction of central elements of the oxidative stress response by the majority of investigated metals is the basic detoxification process against short-term metal exposure. General detoxification mechanisms also comprised the induction of genes coding for chaperones and those for chelation of metal ions via siderophores and amino acids. Hierarchical clustering, transcription factor analyses, and gene ontology data further revealed activation of genes involved in metal-specific protein catabolism along with repression of growth-related processes such as protein synthesis. Metal ion group specific differences in the expression responses with shared transcriptional regulators for both, up-regulation and repression were also observed. Additionally, some processes unique for individual metals were evident as well. In view of current concerns regarding environmental pollution our results may support ongoing attempts to develop methods to monitor potentially hazardous areas or liquids and to establish standardized tests using suitable eukaryotic a model organism.

Indexed as

Adaptation, PhysiologicalBinding SitesCluster AnalysisCulture MediaGene Expression ProfilingGene Expression Regulation, FungalGene OntologyGenes, FungalHumansIonsMetalsModels, BiologicalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsStress, PhysiologicalToxicity TestsCulture MediaIonsMetalsSaccharomyces cerevisiae ProteinsTranscription Factors

Identifiers

PMID24416162
PMCPMC3886979
OpenAlexW2023326271

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.