Evidence map›Paper›PMID 24415937›Full record

ArticlePLoS pathogens2014

In vivo functions of CPSF6 for HIV-1 as revealed by HIV-1 capsid evolution in HLA-B27-positive subjects.

Matthew S Henning, Brittany N Dubose, Mallori J Burse, Christopher Aiken, Masahiro Yamashita

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Cyclophilin A Regulates Tripartite Motif 5 Alpha Restriction of HIV-1.International journal of molecular sciences · 2025
    Review
  6. Article
  7. Capsid-host interactions for HIV-1 ingress.Microbiology and molecular biology reviews : MMBR · 2023
    Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Matthew S HenningAaron Diamond AIDS Research Center, New York, New York, United States of America.
Brittany N DuboseAaron Diamond AIDS Research Center, New York, New York, United States of America.
Mallori J BurseDepartment of Pathology, Microbiology and Immunology, Vanderbilt University School of Medicine, Nashville, Tennessee, United States of America.
Christopher AikenDepartment of Pathology, Microbiology and Immunology, Vanderbilt University School of Medicine, Nashville, Tennessee, United States of America.
Masahiro YamashitaAaron Diamond AIDS Research Center, New York, New York, United States of America.
Aaron Diamond AIDS Research Center · USVanderbilt University · US

Funding

X-Ray Core P50GM082251 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CHEREPANOV, PETER · 2007 to 2018
$48.1M
Mechanism and role of nuclear entry in HIV-1 replicationR01AI100720 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Masahiro Yamashita · 2012 to 2026
$6.5M
Mechanism and Regulation of HIV-1 UncoatingR01AI076121 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI AIKEN, CHRISTOPHER R · 2008 to 2016
$3.1M
Virology Training ProgramT32AI089554 · NIAID · VANDERBILT UNIVERSITY · PI CROWE, JAMES E · 2010 to 2014
$816k
Regulation of HIV-1 Host Factor Interactions by Cyclophilin AF31AI108481 · NIAID · VANDERBILT UNIVERSITY · PI BURSE, MALLORI JACOLE · 2013 to 2015
$82k
NIAID NIH HHS F31 AI108481NIAID NIH HHS R01 AI076121NIAID NIH HHS R01AI076121NIAID NIH HHS R01 AI100720NIAID NIH HHS R01AI100720NIAID NIH HHS T32 AI089554NIGMS NIH HHS GM082251NIGMS NIH HHS P50 GM082251
6 · The paper itself

Abstract

The host protein CPSF6 possesses a domain that can interact with the HIV-1 capsid (CA) protein. CPSF6 has been implicated in regulating HIV-1 nuclear entry. However, its functional significance for HIV-1 replication has yet to be firmly established. Here we provide evidence for two divergent functions of CPSF6 for HIV-1 replication in vivo. We demonstrate that endogenous CPSF6 exerts an inhibitory effect on naturally occurring HIV-1 variants in individuals carrying the HLA-B27 allele. Conversely, we find a strong selective pressure in these individuals to preserve CPSF6 binding, while escaping from the restrictive activity by CPSF6. This active maintenance of CPSF6 binding during HIV-1 CA evolution in vivo contrasts with the in vitro viral evolution, which can reduce CPSF6 binding to evade from CPSF6-mediated restriction. Thus, these observations argue for a beneficial role of CPSF6 for HIV-1 in vivo. CPSF6-mediated restriction renders HIV-1 less dependent or independent from TNPO3, RanBP2 and Nup153, host factors implicated in HIV-1 nuclear entry. However, viral evolution that maintains CPSF6 binding in HLA-B27+ subjects invariably restores the ability to utilize these host factors, which may be the major selective pressure for CPSF6 binding in vivo. Our study uncovers two opposing CA-dependent functions of CPSF6 in HIV-1 replication in vivo; however, the benefit for binding CPSF6 appears to outweigh the cost, providing support for a vital function of CPSF6 during HIV-1 replication in vivo.

Indexed as

Evolution, MolecularHIV InfectionsVirus ReplicationCapsidHeLa CellsHIV-1HLA-B27 AntigenHumansImmune EvasionmRNA Cleavage and Polyadenylation Factorscleavage factor Im, humanHLA-B27 AntigenmRNA Cleavage and Polyadenylation Factors

Identifiers

PMID24415937
PMCPMC3887095
OpenAlexW2056741297

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.