Evidence map›Paper›PMID 24415871›Full record

ArticleWorld journal of gastroenterology2014

ALK gene copy number gain and its clinical significance in hepatocellular carcinoma.

Shou-Wei Jia, Sha Fu, Fang Wang, Qiong Shao, Hong-Bing Huang, Jian-Yong Shao

Open access · hybridAbstract read
In one paragraph

Article in World journal of gastroenterology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Shou-Wei JiaShou-Wei Jia, Hong-Bing Huang, Department of Pharmacy, Sun Yat-Sen University Cancer Center; State Key Laboratory of Oncology in South China; Collaborative Innovation Center on Cancer Medicine; Guangzhou 510060, Guangdong Province, China.
Sha FuShou-Wei Jia, Hong-Bing Huang, Department of Pharmacy, Sun Yat-Sen University Cancer Center; State Key Laboratory of Oncology in South China; Collaborative Innovation Center on Cancer Medicine; Guangzhou 510060, Guangdong Province, China.
Fang WangShou-Wei Jia, Hong-Bing Huang, Department of Pharmacy, Sun Yat-Sen University Cancer Center; State Key Laboratory of Oncology in South China; Collaborative Innovation Center on Cancer Medicine; Guangzhou 510060, Guangdong Province, China.
Qiong ShaoShou-Wei Jia, Hong-Bing Huang, Department of Pharmacy, Sun Yat-Sen University Cancer Center; State Key Laboratory of Oncology in South China; Collaborative Innovation Center on Cancer Medicine; Guangzhou 510060, Guangdong Province, China.
Hong-Bing HuangShou-Wei Jia, Hong-Bing Huang, Department of Pharmacy, Sun Yat-Sen University Cancer Center; State Key Laboratory of Oncology in South China; Collaborative Innovation Center on Cancer Medicine; Guangzhou 510060, Guangdong Province, China.
Jian-Yong ShaoShou-Wei Jia, Hong-Bing Huang, Department of Pharmacy, Sun Yat-Sen University Cancer Center; State Key Laboratory of Oncology in South China; Collaborative Innovation Center on Cancer Medicine; Guangzhou 510060, Guangdong Province, China.
Sun Yat-sen University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimTo examine the status and clinical significance of anaplastic lymphoma kinase (ALK) gene alterations in hepatocellular carcinoma (HCC) patients.

methodsA total of 213 cases of HCC were examined by fluorescent in situ hybridization using dual color break-apart ALK probes for the detection of chromosomal translocation and gene copy number gain. HCC tissue microarrays were constructed, and the correlation between the ALK status and clinicopathological variables was assessed by χ(2) test or Fisher's exact test. Survival analysis was estimated using the Kaplan-Meier approach with a Log-rank test. Univariate and multivariate analyses of clinical variables were performed using the Cox proportional hazards regression model.

resultsALK gene translocation was not observed in any of the HCC cases included in the present study. ALK gene copy number gain (ALK/CNG) (≥ 4 copies/cell) was detected in 28 (13.15%) of the 213 HCC patients. The 3-year progression-free-survival (PFS) rate for ALK/CNG-positive HCC patients was significantly poorer than ALK/CNG-negative patients (27.3% vs 42.5%, P = 0.048), especially for patients with advanced stage III/IV (0% vs 33.5%, P = 0.007), and patients with grade III disease (24.8% vs 49.9%, P = 0.023). ALK/CNG-positive HCC patients had a significantly poorer prognosis than ALK/CNG-negative patients in the subgroup that was negative for serum hepatitis B virus DNA, with significantly different 3-year overall survival rates (18.2% vs 63.6%, P = 0.021) and PFS rates (18.2% vs 46.9%, P = 0.019). Multivariate Cox proportional hazards regression analysis suggested that ALK/CNG prevalence can predict death in HCC (HR = 1.596; 95%CI: 1.008-2.526, P = 0.046).

conclusionALK/CNG, but not translocation of ALK, is present in HCC and may be an unfavorable prognostic predictor.

Indexed as

DNA Copy Number VariationsGene DosageAdultAgedAnaplastic Lymphoma KinaseBiomarkers, TumorCarcinoma, HepatocellularChi-Square DistributionDisease-Free SurvivalDisease ProgressionFemaleGene Expression Regulation, EnzymologicGene Expression Regulation, NeoplasticGenetic Predisposition to DiseaseHumansImmunohistochemistryALK protein, humanAnaplastic Lymphoma KinaseBiomarkers, TumorReceptor Protein-Tyrosine KinasesAnaplastic lymphoma kinase geneHepatocellular carcinomaPrognostic predictor

Identifiers

PMID24415871
PMCPMC3886007
OpenAlexW1991225370

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.