ArticlePlant molecular biology reporter2013
Transferability of Newly Developed Pear SSR Markers to Other Rosaceae Species.
Article in Plant molecular biology reporter, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed.
- Development and application of a multiple nucleotide polymorphism (MNP)-based molecular identification system for pear cultivars.BMC plant biology · 2025Article
- Genetic diversity assessment of walnut (Juglans regia L.) genotypes from inner Anatolia region Türkiye using ISSR and RAPD markers.Scientific reports · 2025Article
- Genetic Diversity and Identification ofPlants (Basel, Switzerland) · 2024Article
- Genome-wide development of intra- and inter-specific transferable SSR markers and construction of a dynamic web resource for yam molecular breeding: Y2MD.The plant genome · 2024Article
- Transcriptome analysis and development of EST-SSR markers in the mushroom Auricularia heimuer.Scientific reports · 2024Article
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- Development of EST-SSR markers based on transcriptome and its validation in ginger (Zingiber officinale Rosc.).PloS one · 2021Article
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- Article
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- Next Generation Sequencing-Based Molecular Marker Development: A Case Study inMolecules (Basel, Switzerland) · 2018Article
- Characterization of hawthorn (Physiology and molecular biology of plants : an international journal of functional plant biology · 2018Article
- Genome-wide characterization of simple sequence repeats in Pyrus bretschneideri and their application in an analysis of genetic diversity in pear.BMC genomics · 2018Article
- Diversification and independent domestication of Asian and European pears.Genome biology · 2018Article
- Mining and Development of Novel SSR Markers Using Next Generation Sequencing (NGS) Data in Plants.Molecules (Basel, Switzerland) · 2018Review
- Integrated high-density consensus genetic map of Pyrus and anchoring of the 'Bartlett' v1.0 (Pyrus communis) genome.DNA research : an international journal for rapid publication of reports on genes and genomes · 2017Article
- Development of Highly Informative Genome-Wide Single Sequence Repeat Markers for Breeding Applications in Sesame and Construction of a Web Resource: SisatBase.Frontiers in plant science · 2017Article
- Development, characterization and transferability of 10 novel microsatellite markers in Cotoneaster orbicularis Schltdl. (Rosaceae).Journal of genetics · 2016Article
- Isolation and characterization of genomic microsatellite markers for small cardamom (Elettaria cardamomum Maton) for utility in genetic diversity analysis.Physiology and molecular biology of plants : an international journal of functional plant biology · 2016Article
- Genomics-assisted breeding in fruit trees.Breeding science · 2016Review
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8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
A set of 120 simple sequence repeats (SSRs) was developed from the newly assembled pear sequence and evaluated for polymorphisms in seven genotypes of pear from different genetic backgrounds. Of these, 67 (55.8 %) primer pairs produced polymorphic amplifications. Together, the 67 SSRs detected 277 alleles with an average of 4.13 per locus. Sequencing of the amplification products from randomly picked loci NAUPy31a and NAUpy53a verified the presence of the SSR loci. When the 67 primer pairs were tested on 96 individual members of eight species in the Rosaceae family, 61.2 % (41/67) of the tested SSRs successfully amplified a PCR product in at least one of the Rosaceae genera. The transferability from pear to different species varied from 58.2 % (apple) to 11.9 % (cherry). The ratio of transferability also reflected the closer relationships within Maloideae over Prunoideae. Two pear SSR markers, NAUpy43c and NAUpy55k, could distinguish the 20 different apple genotypes thoroughly, and UPGMA cluster analysis grouped them into three groups at the similarity level of 0.56. The high level of polymorphism and good transferability of pear SSRs to Rosaceae species indicate their promise for application to future molecular screening, map construction, and comparative genomic studies among pears and other Rosaceae species.
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