Evidence map›Paper›PMID 24415755›Full record

ArticleThe Journal of biological chemistry2014

The chaperone protein SmgGDS interacts with small GTPases entering the prenylation pathway by recognizing the last amino acid in the CAAX motif.

Nathan J Schuld, Jeffrey S Vervacke, Ellen L Lorimer, Nathan C Simon, Andrew D Hauser, Joseph T Barbieri, Mark D Distefano, Carol L Williams

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
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  5. Post-translational modification of RAS proteins.Current opinion in structural biology · 2021
    Review
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  12. Splice switching an oncogenic ratio of SmgGDS isoforms as a strategy to diminish malignancy.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  13. Review
  14. Review
  15. Article
  16. GEF mechanism revealed by the structure of SmgGDS-558 and farnesylated RhoA complex and its implication for a chaperone mechanism.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Nathan J SchuldDepartment of Pharmacology and Toxicology, Medical College of Wisconsin, Milwaukee, Wisconsin 53226.
Jeffrey S VervackeDepartment of Chemistry, University of Minnesota, Minneapolis, Minnesota 55414.
Ellen L LorimerDepartment of Pharmacology and Toxicology, Medical College of Wisconsin, Milwaukee, Wisconsin 53226.
Nathan C SimonDepartment of Microbiology, Immunology, and Molecular Genetics, Medical College of Wisconsin, Milwaukee, Wisconsin 53226.
Andrew D HauserDepartment of Radiation Oncology, Medical College of Wisconsin, Milwaukee, Wisconsin 53226.
Joseph T BarbieriDepartment of Microbiology, Immunology, and Molecular Genetics, Medical College of Wisconsin, Milwaukee, Wisconsin 53226.
Mark D DistefanoDepartment of Chemistry, University of Minnesota, Minneapolis, Minnesota 55414.
Carol L WilliamsDepartment of Pharmacology and Toxicology, Medical College of Wisconsin, Milwaukee, Wisconsin 53226. Electronic address: williams@mcw.edu.
Medical College of Wisconsin · USUniversity of Minnesota · US

Funding

Vaccines and Therapies Against BotulismU54AI057153 · NIAID · UNIVERSITY OF CHICAGO · PI SHUMAN, HOWARD A · 2003 to 2013
$87.6M
Mechanisms of Bacterial Toxin ActionR01AI030162 · NIAID · MEDICAL COLLEGE OF WISCONSIN · PI BARBIERI, JOSEPH T · 1990 to 2019
$6.7M
Enzymatic Protein LabelingR01GM084152 · NIGMS · UNIVERSITY OF MINNESOTA · PI DISTEFANO, MARK D · 2010 to 2019
$2.6M
Regulation of Ras and Rho Family GTPases in Lung CancerR01CA136799 · NCI · MEDICAL COLLEGE OF WISCONSIN · PI WILLIAMS, CAROL LUCILLE · 2010 to 2014
$1.5M
Structure, Function and Conformational Dynamics of the Ste14p MethyltransferaseR01GM106082 · NIGMS · PURDUE UNIVERSITY · PI HRYCYNA, CHRISTINE A · 2013 to 2017
$1.4M
NCI NIH HHS R01 CA136799NIAID NIH HHS R01 AI030162NIAID NIH HHS R01 AI30162NIAID NIH HHS U54 AI057153NIGMS NIH HHS GM106082NIGMS NIH HHS R01 GM084152NIGMS NIH HHS R01 GM106082
6 · The paper itself

Abstract

Ras family small GTPases localize at the plasma membrane, where they can activate oncogenic signaling pathways. Understanding the mechanisms that promote membrane localization of GTPases will aid development of new therapies to inhibit oncogenic signaling. We previously reported that SmgGDS splice variants promote prenylation and trafficking of GTPases containing a C-terminal polybasic region and demonstrated that SmgGDS-607 interacts with nonprenylated GTPases, whereas SmgGDS-558 interacts with prenylated GTPases in cells. The mechanism that SmgGDS-607 and SmgGDS-558 use to differentiate between prenylated and nonprenylated GTPases has not been characterized. Here, we provide evidence that SmgGDS-607 associates with GTPases through recognition of the last amino acid in the CAAX motif. We show that SmgGDS-607 forms more stable complexes in cells with nonprenylated GTPases that will become geranylgeranylated than with nonprenylated GTPases that will become farnesylated. These binding relationships similarly occur with nonprenylated SAAX mutants. Intriguingly, farnesyltransferase inhibitors increase the binding of WT K-Ras to SmgGDS-607, indicating that the pharmacological shunting of K-Ras into the geranylgeranylation pathway promotes K-Ras association with SmgGDS-607. Using recombinant proteins and prenylated peptides corresponding to the C-terminal sequences of K-Ras and Rap1B, we found that both SmgGDS-607 and SmgGDS-558 directly bind the GTPase C-terminal region, but the specificity of the SmgGDS splice variants for prenylated versus nonprenylated GTPases is diminished in vitro. Finally, we present structural homology models and data from functional prediction software to define both similar and unique features of SmgGDS-607 when compared with SmgGDS-558.

Indexed as

Amino Acid MotifsAmino Acid SequenceGuanine Nucleotide Exchange FactorsHEK293 CellsHumansModels, ChemicalMolecular Sequence DataMonomeric GTP-Binding ProteinsPrenylationSequence Analysis, ProteinSoftwareGuanine Nucleotide Exchange FactorsMonomeric GTP-Binding ProteinsRAP1GDS1 protein, humanFTIGGTIIsoprenoidK-RasProtein ComplexesProtein FarnesylationProtein IsoprenylationRap1Small GTPasesSmgGDS

Identifiers

PMID24415755
PMCPMC3945348
OpenAlexW2074797041

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.