Evidence map›Paper›PMID 24413736›Full record

ArticleNature genetics2014

Pancreatic islet enhancer clusters enriched in type 2 diabetes risk-associated variants.

Lorenzo Pasquali, Kyle J Gaulton, Santiago A Rodríguez-Seguí, Loris Mularoni, Irene Miguel-Escalada, İldem Akerman, Juan J Tena, Ignasi Morán, Carlos Gómez-Marín, Martijn van de Bunt and 15 more

Abstract read
In one paragraph

Article in Nature genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 339 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
339citing papers in PubMed, 6 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

339 citing papers in PubMed, 6 syntheses or guidelines pooled it.

  1. Pooled it
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  5. Mechanistic Characterization ofFrontiers in immunology · 2019
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  9. Integrative Clinical and Functional Characterization of theDiagnostics (Basel, Switzerland) · 2026
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279 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors.

Lorenzo Pasquali *Genomic Programming of Beta-cells Laboratory, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain.
Kyle J Gaulton *The Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.
Santiago A Rodríguez-Seguí *Genomic Programming of Beta-cells Laboratory, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain.
Loris MularoniGenomic Programming of Beta-cells Laboratory, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain.
Irene Miguel-EscaladaSchool of Clinical and Experimental Medicine, College of Medical and Dental Sciences, University of Birmingham, United Kingdom.
İldem AkermanGenomic Programming of Beta-cells Laboratory, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain.
Juan J TenaCentro Andaluz de Biología del Desarrollo (CABD) CSIC-UPO-Junta de Andalucía, Sevilla, Spain.
Ignasi MoránDepartment of Medicine, Imperial College London, London W12 0NN, United Kingdom.
Carlos Gómez-MarínCentro Andaluz de Biología del Desarrollo (CABD) CSIC-UPO-Junta de Andalucía, Sevilla, Spain.
Martijn van de BuntThe Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.
Joan Ponsa-CobasDepartment of Medicine, Imperial College London, London W12 0NN, United Kingdom.
Natalia CastroGenomic Programming of Beta-cells Laboratory, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain.
Takao NammoGenomic Programming of Beta-cells Laboratory, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain.
Inês CebolaDepartment of Medicine, Imperial College London, London W12 0NN, United Kingdom.
Javier García-HurtadoGenomic Programming of Beta-cells Laboratory, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain.
Miguel Angel MaestroGenomic Programming of Beta-cells Laboratory, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain.
François PattouUniversity of Lille 2, INSERM U859 Biotherapies Diabete, Lille, France.
Lorenzo PiemontiClinical Transplant Unit, San Raffaele Scientific Institute, Milano, Italy.
Thierry BerneyCell Isolation and Transplantation Center, Department of Surgery, Geneva University Hospitals and University of Geneva, Switzerland.
Anna L GloynOxford Centre for Diabetes, Endocrinology, and Metabolism, Churchill Hospital, Oxford, United Kingdom.
Philippe RavassardCentre de Recherche de l'Institut du Cerveau et de la Moelle, Biotechnology & Biotherapy team, CNRS UMR7225; INSERM U975; University Pierre et Marie Curie, Paris.
José Luis Gómez SkarmetaCentro Andaluz de Biología del Desarrollo (CABD) CSIC-UPO-Junta de Andalucía, Sevilla, Spain.
Ferenc MüllerSchool of Clinical and Experimental Medicine, College of Medical and Dental Sciences, University of Birmingham, United Kingdom.
Mark I McCarthyThe Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.
Jorge FerrerGenomic Programming of Beta-cells Laboratory, Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain.

Funding

Wellcome Trust 090367Wellcome Trust 090532Wellcome Trust 095101Wellcome Trust 098381Wellcome Trust 101033
6 · The paper itself

Abstract

Type 2 diabetes affects over 300 million people, causing severe complications and premature death, yet the underlying molecular mechanisms are largely unknown. Pancreatic islet dysfunction is central in type 2 diabetes pathogenesis, and understanding islet genome regulation could therefore provide valuable mechanistic insights. We have now mapped and examined the function of human islet cis-regulatory networks. We identify genomic sequences that are targeted by islet transcription factors to drive islet-specific gene activity and show that most such sequences reside in clusters of enhancers that form physical three-dimensional chromatin domains. We find that sequence variants associated with type 2 diabetes and fasting glycemia are enriched in these clustered islet enhancers and identify trait-associated variants that disrupt DNA binding and islet enhancer activity. Our studies illustrate how islet transcription factors interact functionally with the epigenome and provide systematic evidence that the dysregulation of islet enhancers is relevant to the mechanisms underlying type 2 diabetes.

Indexed as

Base SequenceChromatinChromatin ImmunoprecipitationDiabetes Mellitus, Type 2Electrophoretic Mobility Shift AssayEnhancer Elements, GeneticFormaldehydeGene Expression RegulationGene Regulatory NetworksGenome-Wide Association StudyHumansIslets of LangerhansMolecular Sequence DataSequence Analysis, RNATranscription FactorsWeb BrowserChromatinFormaldehydeTranscription Factors

Identifiers

PMID24413736
PMCPMC3935450

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.