Evidence map›Paper›PMID 24413562›Full record

ArticleNucleic acids research2014

Organization of the human mitochondrial transcription initiation complex.

Elena Yakubovskaya, Kip E Guja, Edward T Eng, Woo Suk Choi, Edison Mejia, Dmitri Beglov, Mark Lukin, Dima Kozakov, Miguel Garcia-Diaz

Abstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Mechanisms and regulation of human mitochondrial transcription.Nature reviews. Molecular cell biology · 2024
    Review
  7. Article
  8. Article
  9. Review
  10. Human Mitochondrial RNA Processing and Modifications: Overview.International journal of molecular sciences · 2021
    Review
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Mechanisms of mammalian mitochondrial transcription.Protein science : a publication of the Protein Society · 2019
    Review
  17. Article
  18. Article
  19. Structural basis of mitochondrial transcription.Nature structural & molecular biology · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Elena YakubovskayaDepartment of Pharmacological Sciences, Stony Brook University, Stony Brook, NY 11794, Cryo-Electron Microscopy Facility, New York Structural Biology Center, New York, NY 10027 and Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA.
Kip E Guja
Edward T Eng
Woo Suk Choi
Edison Mejia
Dmitri Beglov
Mark Lukin
Dima Kozakov
Miguel Garcia-Diaz

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM008444 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI FROHMAN, MICHAEL A. · 1992 to 2024
$12.6M
A MULTISTAGE APPROACH TO PROTEIN-PROTEIN DOCKINGR01GM061867 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI VAJDA, SANDOR · 2000 to 2016
$4.0M
RES FACIL CONSTRUCTION: HALLUCINOGENSC06RR017528 · NCRR · NEW YORK STRUCTURAL BIOLOGY CENTER · PI COWBURN, DAVID · 2002 to 2002
$2.0M
Mechanisms of mitochondrial transcriptionR01GM100021 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI GARCIA-DIAZ, MIGUEL · 2012 to 2016
$1.5M
Refinement Methods for Protein Docking based on Exploring Multi-Dimensional EnergR01GM093147 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI KOZAKOV, DMYTRO, PASCHALIDIS, IOANNIS · 2011 to 2014
$1.2M
Analysis of RNA polymerase fidelity and its implications for cellular functionR00ES015421 · NIEHS · STATE UNIVERSITY NEW YORK STONY BROOK · PI GARCIA-DIAZ, MIGUEL · 2008 to 2010
$733k
Characterization of an essential mitochondrial rRNA methyltransferaseF30ES022930 · NIEHS · STATE UNIVERSITY NEW YORK STONY BROOK · PI GUJA, KIP E · 2013 to 2014
$95k
NCIPC CDC HHS C06 RR017528-01-CEMNCRR NIH HHS C06 RR017528NIEHS NIH HHS F30 ES022930NIEHS NIH HHS F30-ES022930NIEHS NIH HHS R00 ES015421NIEHS NIH HHS R00-ES015421NIGMS NIH HHS R01 GM061867NIGMS NIH HHS R01 GM093147NIGMS NIH HHS R01 GM100021NIGMS NIH HHS R01-GM100021NIGMS NIH HHS R01- GM61687NIGMS NIH HHS R01-GM93147NIGMS NIH HHS T32 GM008444
6 · The paper itself

Abstract

Initiation of transcription in human mitochondria involves two factors, TFAM and TFB2M, in addition to the mitochondrial RNA polymerase, POLRMT. We have investigated the organization of the human mitochondrial transcription initiation complex on the light-strand promoter (LSP) through solution X-ray scattering, electron microscopy (EM) and biochemical studies. Our EM results demonstrate a compact organization of the initiation complex, suggesting that protein-protein interactions might help mediate initiation. We demonstrate that, in the absence of DNA, only POLRMT and TFAM form a stable interaction, albeit one with low affinity. This is consistent with the expected transient nature of the interactions necessary for initiation and implies that the promoter DNA acts as a scaffold that enables formation of the full initiation complex. Docking of known crystal structures into our EM maps results in a model for transcriptional initiation that strongly correlates with new and existing biochemical observations. Our results reveal the organization of TFAM, POLRMT and TFB2M around the LSP and represent the first structural characterization of the entire mitochondrial transcriptional initiation complex.

Indexed as

Transcription Initiation, GeneticDNA-Binding ProteinsDNA-Directed RNA PolymerasesHumansMethyltransferasesMitochondriaMitochondrial ProteinsModels, MolecularPromoter Regions, GeneticTranscription FactorsDNA-Binding ProteinsDNA-Directed RNA PolymerasesMethyltransferasesMitochondrial ProteinsPOLRMT protein, humanTFAM protein, humanTFB1M protein, humanTFB2M protein, humanTranscription Factors

Identifiers

PMID24413562
PMCPMC3973321

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.