Evidence map›Paper›PMID 24409299›Full record

ArticlePloS one2014

Probing the subcellular localization of hopanoid lipids in bacteria using NanoSIMS.

David M Doughty, Michael Dieterle, Alex L Sessions, Woodward W Fischer, Dianne K Newman

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Bacterial lipid biophysics and membrane organization.Current opinion in microbiology · 2023
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Impact of Fatty-Acid Labeling ofFrontiers in microbiology · 2020
    Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Focal Targeting of the Bacterial Envelope by Antimicrobial Peptides.Frontiers in cell and developmental biology · 2016
    Review
  18. Article
  19. Article
  20. Exploring the existence of lipid rafts in bacteria.Microbiology and molecular biology reviews : MMBR · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

David M DoughtyDivision of Biology, California Institute of Technology, Pasadena, California, United States of America ; Howard Hughes Medical Institute, Pasadena, California, United States of America.
Michael DieterleDivision of Biology, California Institute of Technology, Pasadena, California, United States of America.
Alex L SessionsDivision of Geological and Planetary Sciences, California Institute of Technology, Pasadena, California, United States of America.
Woodward W FischerDivision of Geological and Planetary Sciences, California Institute of Technology, Pasadena, California, United States of America.
Dianne K NewmanDivision of Biology, California Institute of Technology, Pasadena, California, United States of America ; Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, California, United States of America ; Howard Hughes Medical Institute, Pasadena, California, United States of America.
California Institute of Technology · USHoward Hughes Medical Institute · US

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

The organization of lipids within biological membranes is poorly understood. Some studies have suggested lipids group into microdomains within cells, but the evidence remains controversial due to non-native imaging techniques. A recently developed NanoSIMS technique indicated that sphingolipids group into microdomains within membranes of human fibroblast cells. We extended this NanoSIMS approach to study the localization of hopanoid lipids in bacterial cells by developing a stable isotope labeling method to directly detect subcellular localization of specific lipids in bacteria with ca. 60 nm resolution. Because of the relatively small size of bacterial cells and the relative abundance of hopanoid lipids in membranes, we employed a primary (2)H-label to maximize our limit of detection. This approach permitted the analysis of multiple stable isotope labels within the same sample, enabling visualization of subcellular lipid microdomains within different cell types using a secondary label to mark the growing end of the cell. Using this technique, we demonstrate subcellular localization of hopanoid lipids within alpha-proteobacterial and cyanobacterial cells. Further, we provide evidence of hopanoid lipid domains in between cells of the filamentous cyanobacterium Nostoc punctiforme. More broadly, our method provides a means to image lipid microdomains in a wide range of cell types and test hypotheses for their functions in membranes.

Indexed as

Lipid MetabolismBacteriaBiological TransportIntracellular SpaceIsotope LabelingPentacyclic TriterpenesPentacyclic Triterpenes

Identifiers

PMID24409299
PMCPMC3883690
OpenAlexW2092092194

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.