Evidence map›Paper›PMID 24408076›Full record

ArticleProtein science : a publication of the Protein Society2014

Green-lighting green fluorescent protein: faster and more efficient folding by eliminating a cis-trans peptide isomerization event.

David J Rosenman, Yao-ming Huang, Ke Xia, Keith Fraser, Victoria E Jones, Colleen M Lamberson, Patrick Van Roey, Wilfredo Colón, Christopher Bystroff

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Exploring the folding pathway of green fluorescent protein through disulfide engineering.Protein science : a publication of the Protein Society · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

David J RosenmanRensselaer Polytechnic Institute, Biological Sciences, 110 8th St., Troy, New York, 12180.
Yao-ming Huang
Ke Xia
Keith Fraser
Victoria E Jones
Colleen M Lamberson
Patrick Van Roey
Wilfredo Colón
Christopher Bystroff

Funding

Modular and Project Based Training to Enhance Rigor and Reproducibility in Research for Diverse Biomedical CareersT32GM067545 · NIGMS · RENSSELAER POLYTECHNIC INSTITUTE · PI VASHISHTH, DEEPAK · 2004 to 2020
$3.0M
Computational design of specific binding proteins using Leave-One-OutR01GM099827 · NIGMS · RENSSELAER POLYTECHNIC INSTITUTE · PI BONDOS, SARAH E, BYSTROFF, CHRISTOPHER · 2012 to 2021
$2.9M
Computational design of specific binding proteins using Leave-One-OutR21GM088838 · NIGMS · RENSSELAER POLYTECHNIC INSTITUTE · PI BYSTROFF, CHRISTOPHER · 2009 to 2010
$397k
NIGMS NIH HHS 5R01 GM099827NIGMS NIH HHS 5R21GM088838NIGMS NIH HHS R01 GM099827NIGMS NIH HHS R21 GM088838NIGMS NIH HHS T32 GM067545
6 · The paper itself

Abstract

Wild-type green fluorescent protein (GFP) folds on a time scale of minutes. The slow step in folding is a cis-trans peptide bond isomerization. The only conserved cis-peptide bond in the native GFP structure, at P89, was remodeled by the insertion of two residues, followed by iterative energy minimization and side chain design. The engineered GFP was synthesized and found to fold faster and more efficiently than its template protein, recovering 50% more of its fluorescence upon refolding. The slow phase of folding is faster and smaller in amplitude, and hysteresis in refolding has been eliminated. The elimination of a previously reported kinetically trapped state in refolding suggests that X-P89 is trans in the trapped state. A 2.55 Å resolution crystal structure revealed that the new variant contains only trans-peptide bonds, as designed. This is the first instance of a computationally remodeled fluorescent protein that folds faster and more efficiently than wild type.

Indexed as

Protein EngineeringProtein FoldingCrystallography, X-RayGreen Fluorescent ProteinsKineticsModels, MolecularPeptidesProtein RefoldingStereoisomerismGreen Fluorescent ProteinsPeptidescisfolding kineticsGFPprotein designtrans isomerization

Identifiers

PMID24408076
PMCPMC3970891

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.