Evidence map›Paper›PMID 24405987›Full record

ArticleBMC plant biology2014

Molecular and functional characterization of cold-responsive C-repeat binding factors from Brachypodium distachyon.

Jae Yong Ryu, Shin-Young Hong, Sin-Hye Jo, Je-Chang Woo, Sangmin Lee, Chung-Mo Park

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
8.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 58 citations in OpenAlex.

  1. Pooled it
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  3. Genome-Wide Identification and Transcriptional Analysis ofInternational journal of molecular sciences · 2024
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  6. Isolation and characterization of wheat ice recrystallisation inhibition gene promoter involved in low temperature and methyl jasmonate responses.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022
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  7. Article
  8. Genetic Mechanisms of Cold Signaling in Wheat (Life (Basel, Switzerland) · 2022
    Review
  9. Drought resistance of tobacco overexpressing theFrontiers in plant science · 2022
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  12. In Vitro Tissue Culture inInternational journal of molecular sciences · 2020
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  15. Overexpression ofFrontiers in plant science · 2020
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  18. Multifaceted Role ofInternational journal of molecular sciences · 2019
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  19. Identification of genes from the ICE-CBF-COR pathway under cold stress inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2018
    Article
  20. Wheat F-Box Protein GeneFrontiers in plant science · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jae Yong Ryu
Shin-Young Hong
Sin-Hye Jo
Je-Chang Woo
Sangmin Lee
Chung-Mo ParkDepartment of Chemistry, Seoul National University, Seoul 151-742, Korea. cmpark@snu.ac.kr.
Seoul National University · KRMokpo National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAdverse environmental conditions severely influence various aspects of plant growth and developmental processes, causing worldwide reduction of crop yields. The C-repeat binding factors (CBFs) are critical transcription factors constituting the gene regulatory network that mediates the acclimation process to low temperatures. They regulate a large number of cold-responsive genes, including COLD-REGULATED (COR) genes, via the CBF-COR regulon. Recent studies have shown that the CBF transcription factors also play a role in plant responses to drought and salt stresses. Putative CBF gene homologues and their downstream genes are also present in the genome of Brachypodium distachyon, which is perceived as a monocot model in recent years. However, they have not been functionally characterized at the molecular level.

resultsThree CBF genes that are responsive to cold were identified from Brachypodium, designated BdCBF1, BdCBF2, and BdCBF3, and they were functionally characterized by molecular biological and transgenic approaches in Brachypodium and Arabidopsis thaliana. Our results demonstrate that the BdCBF genes contribute to the tolerance response of Brachypodium to cold, drought, and salt stresses by regulating downstream targets, such as DEHYDRIN5.1 (Dhn5.1) and COR genes. The BdCBF genes are induced under the environmental stress conditions. The BdCBF proteins possess transcriptional activation activity and bind directly to the promoters of the target genes. Transgenic Brachypodium plants overexpressing the BdCBF genes exhibited enhanced resistance to drought and salt stresses as well as low temperatures, and accordingly endogenous contents of proline and soluble sugars were significantly elevated in the transgenic plants. The BdCBF transcription factors are also functional in the heterologous system Arabidopsis. Transgenic Arabidopsis plants overexpressing the BdCBF genes were also tolerant to freezing, drought, and salt stresses, and a set of stress-responsive genes was upregulated in the transgenic Arabidopsis plants.

conclusionsTaken together, our results strongly support that the BdCBF transcription factors are key regulators of cold stress responses in Brachypodium and the CBF-mediated cold stress signaling pathway is conserved in this plant species. We believe that this study would confer great impact on stress biology in monocot species and could be applied to engineer abiotic stress tolerance of bioenergy grass species.

Indexed as

Cold TemperatureBrachypodiumGene Expression Regulation, PlantPlant ProteinsTranscription FactorsPlant ProteinsTranscription Factors

Identifiers

PMID24405987
PMCPMC3898008
OpenAlexW1984594984

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.