Evidence map›Paper›PMID 24404161›Full record

ArticlePloS one2014

HRES-1/Rab4 promotes the formation of LC3(+) autophagosomes and the accumulation of mitochondria during autophagy.

Gergely Talaber, Gabriella Miklossy, Zachary Oaks, Yuxin Liu, Sharon A Tooze, Dmitriy M Chudakov, Katalin Banki, Andras Perl

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 2 pooled it
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 2 syntheses or guidelines pooled it, 50 citations in OpenAlex.

  1. Guideline
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  10. Autophagy pathways in autoimmune diseases.Journal of autoimmunity · 2023
    Review
  11. Article
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  13. Cell type-specific mechanistic target of rapamycin-dependent distortion of autophagy pathways in lupus nephritis.Translational research : the journal of laboratory and clinical medicine · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Gergely TalaberDepartments of Medicine, State University of New York, Upstate Medical University, Syracuse, New York, United States of America.
Gabriella MiklossyDepartments of Medicine, State University of New York, Upstate Medical University, Syracuse, New York, United States of America.
Zachary OaksDepartments of Medicine, State University of New York, Upstate Medical University, Syracuse, New York, United States of America ; Biochemistry and Molecular Biology, State University of New York, Upstate Medical University, Syracuse, New York, United States of America.
Yuxin LiuDepartments of Medicine, State University of New York, Upstate Medical University, Syracuse, New York, United States of America.
Sharon A ToozeCancer Research UK London Research Institute, London, England, United Kingdom.
Dmitriy M ChudakovShemiakin-Ovchinnikov Institute of Bioorganic Chemistry, RAS, Moscow, Russia.
Katalin BankiDepartment of Pathology, State University of New York, Upstate Medical University, Syracuse, New York, United States of America.
Andras PerlDepartments of Medicine, State University of New York, Upstate Medical University, Syracuse, New York, United States of America ; Biochemistry and Molecular Biology, State University of New York, Upstate Medical University, Syracuse, New York, United States of America ; Microbiology and Immunology, State University of New York, Upstate Medical University, Syracuse, New York, United States of America.
SUNY Upstate Medical University · USCancer Research UK · GBInstitute of Bioorganic Chemistry · RU

Funding

Metabolic Control of T-cell Lineage Specification in SLER01AI072648 · NIAID · UPSTATE MEDICAL UNIVERSITY · PI PERL, ANDRAS · 2008 to 2024
$6.1M
IMPACT OF HRES-1 ENDOGENOUS RETROVIRUS IN SLER01AI048079 · NIAID · UPSTATE MEDICAL UNIVERSITY · PI PERL, ANDRAS · 2000 to 2013
$2.7M
Genetic and Immunological Impact of the HRES-1/Rab4 Locus in SLER56AI048079 · NIAID · UPSTATE MEDICAL UNIVERSITY · PI PERL, ANDRAS · 2008 to 2008
$275k
Cancer Research UK 15153NIAID NIH HHS AI048079NIAID NIH HHS AI072648NIAID NIH HHS R01 AI048079NIAID NIH HHS R01 AI072648NIAID NIH HHS R56 AI048079
6 · The paper itself

Abstract

HRES-1/Rab4 is a small GTPase that regulates endocytic recycling. It has been colocalized to mitochondria and the mechanistic target of rapamycin (mTOR), a suppressor of autophagy. Since the autophagosomal membrane component microtubule-associated protein light chain 3 (LC3) is derived from mitochondria, we investigated the impact of HRES-1/Rab4 on the formation of LC3(+) autophagosomes, their colocalization with HRES-1/Rab4 and mitochondria, and the retention of mitochondria during autophagy induced by starvation and rapamycin. HRES-1/Rab4 exhibited minimal baseline colocalization with LC3, which was enhanced 22-fold upon starvation or 6-fold upon rapamycin treatment. Colocalization of HRES-1/Rab4 with mitochondria was increased >2-fold by starvation or rapamycin. HRES-1/Rab4 overexpression promoted the colocalization of mitochondria with LC3 upon starvation or rapamycin treatment. A dominant-negative mutant, HRES-1/Rab4(S27N) had reduced colocalization with LC3 and mitochondria upon starvation but not rapamycin treatment. A constitutively active mutant, HRES-1/Rab4(Q72L) showed diminished colocalization with LC3 but promoted the partitioning of mitochondria with LC3 upon starvation or rapamycin treatment. Phosphorylation-resistant mutant HRES-1/Rab4(S204Q) showed diminished colocalization with LC3 but increased partitioning to mitochondria. A newly discovered C-terminally truncated native isoform, HRES-1/Rab4(1-121), showed enhanced localization to LC3 and mitochondria without starvation or rapamycin treatment. HRES-1/Rab4(1-121) increased the formation of LC3(+) autophagosomes in resting cells, while other isoforms promoted autophagosome formation upon starvation. HRES-1/Rab4, HRES-1/Rab4(1-121), HRES-1/Rab4(Q72L) and HRES-1/Rab4(S204Q) promoted the accumulation of mitochondria during starvation. The specificity of HRES-1/Rab4-mediated mitochondrial accumulation is indicated by its abrogation by dominant-negative HRES-1/Rab4(S27N) mutation. The formation of interconnected mitochondrial tubular networks was markedly enhanced by HRES-1/Rab4(Q72L) upon starvation, which may contribute to the retention of mitochondria during autophagy. The present study thus indicates that HRES-1/Rab4 regulates autophagy through promoting the formation of LC3(+) autophagosomes and the preservation of mitochondria.

Indexed as

Amino Acid SequenceAutophagyCell LineGene ExpressionGenes, ReporterHumansIntracellular MembranesMacrolidesMicrotubule-Associated ProteinsMitochondriaMolecular Sequence DataPhagosomesProtein BindingProtein Transportrab4 GTP-Binding Proteinsbafilomycin A1MacrolidesMAP1LC3A protein, humanMicrotubule-Associated Proteinsrab4 GTP-Binding Proteins

Identifiers

PMID24404161
PMCPMC3880286
OpenAlexW2020618744

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.