Evidence map›Paper›PMID 24403078›Full record

ArticleThe Journal of biological chemistry2014

Coupling of human DNA excision repair and the DNA damage checkpoint in a defined in vitro system.

Laura A Lindsey-Boltz, Michael G Kemp, Joyce T Reardon, Vanessa DeRocco, Ravi R Iyer, Paul Modrich, Aziz Sancar

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 58 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Nucleotide excision repair: a versatile and smart toolkit.Acta biochimica et biophysica Sinica · 2022
    Review
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Molecular mechanisms and genomic maps of DNA excision repair inThe Journal of biological chemistry · 2017
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. PostExcision Events in Human Nucleotide Excision Repair.Photochemistry and photobiology · 2017
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Laura A Lindsey-BoltzFrom the Department of Biochemistry and Biophysics, University of North Carolina School of Medicine, Chapel Hill, North Carolina 27599-7260 and.
Michael G Kemp
Joyce T Reardon
Vanessa DeRocco
Ravi R Iyer
Paul Modrich
Aziz Sancar
University of North Carolina at Chapel Hill · USDuke Medical Center · USDuke University · US

Funding

Women's Cancer Research ProgramP30CA014236 · NCI · DUKE UNIVERSITY · PI DONNA NIEDZWIECKI · 1985 to 2026
$174.8M
STRUCTURE AND FUNCTION OF UVRABC EXCISION NUCLEASER01GM032833 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SANCAR, AZIZ · 1985 to 2015
$8.9M
Enzymology Of Eukaryotic Mismatch RepairR01GM045190 · NIGMS · DUKE UNIVERSITY · PI MODRICH, PAUL LAWRENCE · 1991 to 2018
$6.8M
Howard Hughes Medical InstituteNCI NIH HHS P30 CA014236NIGMS NIH HHS GM32833NIGMS NIH HHS GM45190NIGMS NIH HHS R01 GM032833NIGMS NIH HHS R01 GM045190
6 · The paper itself

Abstract

DNA repair and DNA damage checkpoints work in concert to help maintain genomic integrity. In vivo data suggest that these two global responses to DNA damage are coupled. It has been proposed that the canonical 30 nucleotide single-stranded DNA gap generated by nucleotide excision repair is the signal that activates the ATR-mediated DNA damage checkpoint response and that the signal is enhanced by gap enlargement by EXO1 (exonuclease 1) 5' to 3' exonuclease activity. Here we have used purified core nucleotide excision repair factors (RPA, XPA, XPC, TFIIH, XPG, and XPF-ERCC1), core DNA damage checkpoint proteins (ATR-ATRIP, TopBP1, RPA), and DNA damaged by a UV-mimetic agent to analyze the basic steps of DNA damage checkpoint response in a biochemically defined system. We find that checkpoint signaling as measured by phosphorylation of target proteins by the ATR kinase requires enlargement of the excision gap generated by the excision repair system by the 5' to 3' exonuclease activity of EXO1. We conclude that, in addition to damaged DNA, RPA, XPA, XPC, TFIIH, XPG, XPF-ERCC1, ATR-ATRIP, TopBP1, and EXO1 constitute the minimum essential set of factors for ATR-mediated DNA damage checkpoint response.

Indexed as

DNA DamageDNA RepairAnimalsAtaxia Telangiectasia Mutated ProteinsDNAExodeoxyribonucleasesHumansKineticsMiceModels, BiologicalPhosphorylationReplication Protein ASignal TransductionTumor Suppressor Protein p53Ataxia Telangiectasia Mutated ProteinsATR protein, humanDNAexodeoxyribonuclease IExodeoxyribonucleasesReplication Protein ATumor Suppressor Protein p53Checkpoint ControlDNA Damage ResponseDNA Nucleotide Excision Repairp53Protein Kinases

Identifiers

PMID24403078
PMCPMC3931066
OpenAlexW1968765462

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.