Evidence map›Paper›PMID 24403066›Full record

ArticleThe Journal of biological chemistry2014

A refined model for the TSG-6 link module in complex with hyaluronan: use of defined oligosaccharides to probe structure and function.

Victoria A Higman, David C Briggs, David J Mahoney, Charles D Blundell, Benedict M Sattelle, Douglas P Dyer, Dixy E Green, Paul L DeAngelis, Andrew Almond, Caroline M Milner and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 53 citations in OpenAlex.

  1. Pooled it
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  5. Review
  6. Characterization of the Limbal Epithelial Stem Cell Niche.Investigative ophthalmology & visual science · 2023
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  11. The Inter-α-Trypsin Inhibitor Family: Versatile Molecules in Biology and Pathology.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2020
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  14. Review
  15. Review
  16. Article
  17. Regenerative Engineering of the Rotator Cuff of the Shoulder.ACS biomaterials science & engineering · 2018
    Article
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Victoria A HigmanFrom the Department of Biochemistry, University of Oxford, Oxford OX1 3QU, United Kingdom.
David C Briggs
David J Mahoney
Charles D Blundell
Benedict M Sattelle
Douglas P Dyer
Dixy E Green
Paul L DeAngelis
Andrew Almond
Caroline M Milner
Anthony J Day
University of Manchester · GBUniversity of Oklahoma Health Sciences Center · USUniversity of Oxford · GB

Funding

Arthritis Research UK 16539Arthritis Research UK 18472Arthritis Research UK 19489Biotechnology and Biological Sciences Research Council BB/D526561/1Medical Research Council G0701180Medical Research Council MC_U138274352
6 · The paper itself

Abstract

Tumor necrosis factor-stimulated gene-6 (TSG-6) is an inflammation-associated hyaluronan (HA)-binding protein that contributes to remodeling of HA-rich extracellular matrices during inflammatory processes and ovulation. The HA-binding domain of TSG-6 consists solely of a Link module, making it a prototypical member of the superfamily of proteins that interacts with this high molecular weight polysaccharide composed of repeating disaccharides of D-glucuronic acid and N-acetyl-D-glucosamine (GlcNAc). Previously we modeled a complex of the TSG-6 Link module in association with an HA octasaccharide based on the structure of the domain in its HA-bound conformation. Here we have generated a refined model for a HA/Link module complex using novel restraints identified from NMR spectroscopy of the protein in the presence of 10 distinct HA oligosaccharides (from 4- to 8-mers); the model was then tested using unique sugar reagents, i.e. chondroitin/HA hybrid oligomers and an octasaccharide in which a single sugar ring was (13)C-labeled. The HA chain was found to make more extensive contacts with the TSG-6 surface than thought previously, such that a D-glucuronic acid ring makes stacking and ionic interactions with a histidine and lysine, respectively. Importantly, this causes the HA to bend around two faces of the Link module (resembling the way that HA binds to CD44), potentially providing a mechanism for how TSG-6 can reorganize HA during inflammation. However, the HA-binding site defined here may not play a role in TSG-6-mediated transfer of heavy chains from inter-α-inhibitor onto HA, a process known to be essential for ovulation.

Indexed as

Models, MolecularCell Adhesion MoleculesFemaleHumansHyaluronan ReceptorsHyaluronic AcidInflammationOligosaccharidesOvulationProtein BindingProtein Structure, TertiaryCD44 protein, humanCell Adhesion MoleculesHyaluronan ReceptorsHyaluronic AcidOligosaccharidesTNFAIP6 protein, humanChondroitinDefined SugarsHyaluronateIsothermal Titration CalorimetryMolecular ModelingNMRTSG-6

Identifiers

PMID24403066
PMCPMC3937638
OpenAlexW1986204569

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.