ArticleThe ISME journal2014
Metaproteomic analysis of a winter to spring succession in coastal northwest Atlantic Ocean microbial plankton.
Article in The ISME journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
39 citing papers in PubMed, 98 citations in OpenAlex.
- Article
- Diel cycle of lanthanide-dependent methylotrophy by TMED127/Methylaequorales bacteria in oligotrophic surface seawater.Applied and environmental microbiology · 2025Article
- Phaeocystis globosa and diatom blooms promote distinct bacterial communities and associations in a coastal ecosystem.Environmental microbiology reports · 2024Article
- Jellyfish detritus supports niche partitioning and metabolic interactions among pelagic marine bacteria.Microbiome · 2023Article
- Highly-resolved interannual phytoplankton community dynamics of the coastal Northwest Atlantic.ISME communications · 2022Article
- Lanthanide-Dependent Methanol Metabolism of aInternational journal of molecular sciences · 2022Article
- Dynamics of actively dividing prokaryotes in the western Mediterranean Sea.Scientific reports · 2022Article
- Metaexoproteomics Reveals Microbial Behavior in the Ocean's Interior.Frontiers in microbiology · 2022Article
- Diel Protein Regulation of Marine Picoplanktonic Communities Assessed by Metaproteomics.Microorganisms · 2021Article
- Prokaryotic responses to a warm temperature anomaly in northeast subarctic Pacific waters.Communications biology · 2021Article
- Illuminating Key Microbial Players and Metabolic Processes Involved in the Remineralization of Particulate Organic Carbon in the Ocean's Twilight Zone by Metaproteomics.Applied and environmental microbiology · 2021Article
- Article
- Physical mixing in coastal waters controls and decouples nitrification via biomass dilution.Proceedings of the National Academy of Sciences of the United States of America · 2021Article
- Metaproteomics Reveals Similar Vertical Distribution of Microbial Transport Proteins in Particulate Organic Matter Throughout the Water Column in the Northwest Pacific Ocean.Frontiers in microbiology · 2021Article
- Transcriptional Patterns of Biogeochemically Relevant Marker Genes by Temperate Marine Bacteria.Frontiers in microbiology · 2020Article
- Metaproteomics reveal that rapid perturbations in organic matter prioritize functional restructuring over taxonomy in western Arctic Ocean microbiomes.The ISME journal · 2020Article
- Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing.Journal of proteome research · 2019Review
- Deciphering the Functioning of Microbial Communities: Shedding Light on the Critical Steps in Metaproteomics.Frontiers in microbiology · 2019Article
- Drivers of Regional Bacterial Community Structure and Diversity in the Northwest Atlantic Ocean.Frontiers in microbiology · 2019Article
- Microbial niches in marine oxygen minimum zones.Nature reviews. Microbiology · 2018Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In this study, we used comparative metaproteomics to investigate the metabolic activity of microbial plankton inhabiting a seasonally hypoxic basin in the Northwest Atlantic Ocean (Bedford Basin). From winter to spring, we observed a seasonal increase in high-affinity membrane transport proteins involved in scavenging of organic substrates; Rhodobacterales transporters were strongly associated with the spring phytoplankton bloom, whereas SAR11 transporters were abundant in the underlying waters. A diverse array of transporters for organic compounds were similar to the SAR324 clade, revealing an active heterotrophic lifestyle in coastal waters. Proteins involved in methanol oxidation (from the OM43 clade) and carbon monoxide (from a wide variety of bacteria) were identified throughout Bedford Basin. Metabolic niche partitioning between the SUP05 and ARCTIC96BD-19 clades, which together comprise the Gamma-proteobacterial sulfur oxidizers group was apparent. ARCTIC96BD-19 proteins involved in the transport of organic compounds indicated that in productive coastal waters this lineage tends toward a heterotrophic metabolism. In contrast, the identification of sulfur oxidation proteins from SUP05 indicated the use of reduced sulfur as an energy source in hypoxic bottom water. We identified an abundance of Marine Group I Thaumarchaeota proteins in the hypoxic deep layer, including proteins for nitrification and carbon fixation. No transporters for organic compounds were detected among the thaumarchaeal proteins, suggesting a reliance on autotrophic carbon assimilation. In summary, our analyses revealed the spatiotemporal structure of numerous metabolic activities in the coastal ocean that are central to carbon, nitrogen and sulfur cycling in the sea.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.