Evidence map›Paper›PMID 24400227›Full record

ArticleFrontiers in cellular and infection microbiology2013

Genetic characterization of trh positive Vibrio spp. isolated from Norway.

Anette B Ellingsen, Jaran S Olsen, Per E Granum, Liv M Rørvik, Narjol González-Escalona

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Saudi journal of medicine & medical sciences
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Anette B EllingsenDepartment of Food Safety and Infection Biology, Norwegian School of Veterinary Science Oslo, Norway.
Jaran S OlsenNorwegian Defence Research Establishment Kjeller, Norway.
Per E GranumDepartment of Food Safety and Infection Biology, Norwegian School of Veterinary Science Oslo, Norway.
Liv M RørvikDepartment of Food Safety and Infection Biology, Norwegian School of Veterinary Science Oslo, Norway.
Narjol González-EscalonaFood and Drug Administration, Center for Food Safety and Applied Nutrition College Park, MD, USA.
Norwegian University of Life Sciences · NOCenter for Food Safety and Applied Nutrition · USNorwegian Defence Research Establishment · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The thermostable direct hemolysin (TDH) and/or TDH-related hemolysin (TRH) genes are carried by most virulent Vibrio parahaemolyticus serovars. In Norway, trh+ V. parahaemolyticus constitute 4.4 and 4.5% of the total number of V. parahaemolyticus isolated from blue mussel (Mytilus edulis) and water, respectively. The trh gene is located in a region close to the gene cluster for urease production (ure). This region was characterized in V. parahaemolyticus strain TH3996 and it was found that a nickel transport operon (nik) was located between the first gene (ureR) and the rest of the ure cluster genes. The organization of the trh-ureR-nik-ure gene cluster in the Norwegian trh+ isolates was unknown. In this study, we explore the gene organization within the trh-ureR-nik-ure cluster for these isolates. PCR analyses revealed that the genes within the trh-ureR-nik-ure gene cluster of Norwegian trh+ isolates were organized in a similar fashion as reported previously for TH33996. Additionally, the phylogenetic relationship among these trh+ isolates was investigated using Multilocus Sequence Typing (MLST). Analysis by MLST or ureR-trh sequences generated two different phylogenetic trees for the same strains analyzed, suggesting that ureR-trh genes have been acquired at different times in Norwegian V. parahaemolyticus isolates. MLST results revealed that some pathogenic and non-pathogenic V. parahaemolyticus isolates in Norway appear to be highly genetically related.

Indexed as

Multigene FamilyAnimalsBacterial ProteinsCluster AnalysisDNA, BacterialGene OrderHemolysin ProteinsMolecular Sequence DataMultilocus Sequence TypingMytilus edulisNorwayPhylogenyPolymerase Chain ReactionSequence HomologyVibrio parahaemolyticusBacterial ProteinsDNA, BacterialHemolysin Proteinsthermostable direct hemolysin-related hemolysin protein, Vibrio parahaemolyticusMLSTPCRtdhtrhureaseV. alginolyticusVibrioV. parahaemolyticus

Identifiers

PMID24400227
PMCPMC3872308
OpenAlexW2167015490

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.