Evidence map›Paper›PMID 24399359›Full record

ArticlePlant physiology2014

De novo assembly and characterization of the transcriptome of the parasitic weed dodder identifies genes associated with plant parasitism.

Aashish Ranjan, Yasunori Ichihashi, Moran Farhi, Kristina Zumstein, Brad Townsley, Rakefet David-Schwartz, Neelima R Sinha

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
26.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 154 citations in OpenAlex.

  1. Review
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  6. Physiological and Biochemical Responses ofLife (Basel, Switzerland) · 2025
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  10. Molecular Mechanism ofMetabolites · 2025
    Article
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  16. Protein Profiling ofPlants (Basel, Switzerland) · 2023
    Article
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31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Aashish RanjanDepartment of Plant Biology, University of California, Davis, California 95616.
Yasunori IchihashiDepartment of Plant Biology, University of California, Davis, California 95616.
Moran FarhiDepartment of Plant Biology, University of California, Davis, California 95616.
Kristina ZumsteinDepartment of Plant Biology, University of California, Davis, California 95616.
Brad TownsleyDepartment of Plant Biology, University of California, Davis, California 95616.
Rakefet David-SchwartzDepartment of Plant Biology, University of California, Davis, California 95616.
Neelima R SinhaDepartment of Plant Biology, University of California, Davis, California 95616 nrsinha@ucdavis.edu.
University of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Parasitic flowering plants are one of the most destructive agricultural pests and have major impact on crop yields throughout the world. Being dependent on finding a host plant for growth, parasitic plants penetrate their host using specialized organs called haustoria. Haustoria establish vascular connections with the host, which enable the parasite to steal nutrients and water. The underlying molecular and developmental basis of parasitism by plants is largely unknown. In order to investigate the process of parasitism, RNAs from different stages (i.e. seed, seedling, vegetative strand, prehaustoria, haustoria, and flower) were used to de novo assemble and annotate the transcriptome of the obligate plant stem parasite dodder (Cuscuta pentagona). The assembled transcriptome was used to dissect transcriptional dynamics during dodder development and parasitism and identified key gene categories involved in the process of plant parasitism. Host plant infection is accompanied by increased expression of parasite genes underlying transport and transporter categories, response to stress and stimuli, as well as genes encoding enzymes involved in cell wall modifications. By contrast, expression of photosynthetic genes is decreased in the dodder infective stages compared with normal stem. In addition, genes relating to biosynthesis, transport, and response of phytohormones, such as auxin, gibberellins, and strigolactone, were differentially expressed in the dodder infective stages compared with stems and seedlings. This analysis sheds light on the transcriptional changes that accompany plant parasitism and will aid in identifying potential gene targets for use in controlling the infestation of crops by parasitic weeds.

Indexed as

Gene Expression Regulation, PlantTranscriptomeBase SequenceCluster AnalysisCuscutaFlowersGene LibraryHigh-Throughput Nucleotide SequencingHost-Parasite InteractionsMolecular Sequence AnnotationMolecular Sequence DataNicotianaPlant StemsPlant WeedsRNA, PlantSeedlingsRNA, Plant

Identifiers

PMID24399359
PMCPMC4226353
OpenAlexW2168609054

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.