Evidence map›Paper›PMID 24399144›Full record

ArticleScientific reports2014

In situ environment rather than substrate type dictates microbial community structure of biofilms in a cold seep system.

On On Lee, Yong Wang, Renmao Tian, Weipeng Zhang, Chun Shum Shek, Salim Bougouffa, Abdulaziz Al-Suwailem, Zenon B Batang, Wei Xu, Guang Chao Wang and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 51 citations in OpenAlex.

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  11. Micro and Nano-Plastics in the Environment: Research Priorities for the Near Future.Reviews of environmental contamination and toxicology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 3 countries.

On On Lee1] Division of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong [2].
Yong Wang1] Sanya Institute of Deep Sea Science and Engineering, Chinese Academy of Sciences, San Ya, Hai Nan, China [2].
Renmao TianDivision of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong.
Weipeng ZhangDivision of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong.
Chun Shum ShekDivision of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong.
Salim Bougouffa1] Division of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong [2] Computational Biosciences Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.
Abdulaziz Al-SuwailemCoastal and Marine Resources Core Laboratory, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.
Zenon B BatangCoastal and Marine Resources Core Laboratory, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.
Wei XuAdvanced Nanofabrication, Imaging, and Characterization Core Laboratory, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.
Guang Chao WangAdvanced Nanofabrication, Imaging, and Characterization Core Laboratory, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.
Xixiang ZhangAdvanced Nanofabrication, Imaging, and Characterization Core Laboratory, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.
Feras F LafiComputational Biosciences Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.
Vladmir B BajicComputational Biosciences Research Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.
Pei-Yuan QianDivision of Life Science, Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong.
King Abdullah University of Science and Technology · SAHong Kong University of Science and Technology · HKChinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Using microscopic and molecular techniques combined with computational analysis, this study examined the structure and composition of microbial communities in biofilms that formed on different artificial substrates in a brine pool and on a seep vent of a cold seep in the Red Sea to test our hypothesis that initiation of the biofilm formation and spreading mode of microbial structures differs between the cold seep and the other aquatic environments. Biofilms on different substrates at two deployment sites differed morphologically, with the vent biofilms having higher microbial abundance and better structural features than the pool biofilms. Microbes in the pool biofilms were more taxonomically diverse and mainly composed of various sulfate-reducing bacteria whereas the vent biofilms were exclusively dominated by sulfur-oxidizing Thiomicrospira. These results suggest that the redox environments at the deployment sites might have exerted a strong selection on microbes in the biofilms at two sites whereas the types of substrates had limited effects on the biofilm development.

Indexed as

BiofilmsCold TemperatureMicrobiotaWater MicrobiologyBiodiversityPhylogeny

Identifiers

PMID24399144
PMCPMC5378041
OpenAlexW2050409302

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.