Evidence map›Paper›PMID 24398692›Full record

ArticleThe Journal of biological chemistry2014

Yeast cells expressing the human mitochondrial DNA polymerase reveal correlations between polymerase fidelity and human disease progression.

Yufeng Qian, Aashiq H Kachroo, Christopher M Yellman, Edward M Marcotte, Kenneth A Johnson

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Alzheimer's Disease: Significant Benefit from the Yeast-Based Models.International journal of molecular sciences · 2023
    Review
  5. Review
  6. Genes · 2021
    Review
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Efforts to make and apply humanized yeast.Briefings in functional genomics · 2016
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Yufeng QianFrom the Institute for Cellular and Molecular Biology.
Aashiq H Kachroo
Christopher M Yellman
Edward M Marcotte
Kenneth A Johnson
Institut de Biologie Moléculaire et Cellulaire · FRInstitut de Biologie systémique et synthétique · FRThe University of Texas at Austin · US

Funding

Mechanism of mitochondrial DNA replicationR01GM044613 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI JOHNSON, KENNETH ALLEN · 1991 to 2011
$4.3M
Proteomics of widespread, reversible protein assemblies in aging and aggregationR01GM076536 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI MARCOTTE, EDWARD M · 2006 to 2014
$2.9M
Correlating defects in mitochondrial DNA replication to physiologyR01GM114223 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI JOHNSON, KENNETH ALLEN · 2015 to 2018
$1.5M
NIGMS NIH HHS GM044613NIGMS NIH HHS R01 GM044613NIGMS NIH HHS R01 GM076536NIGMS NIH HHS R01 GM114223
6 · The paper itself

Abstract

Mutations in the human mitochondrial polymerase (polymerase-γ (Pol-γ)) are associated with various mitochondrial disorders, including mitochondrial DNA (mtDNA) depletion syndrome, Alpers syndrome, and progressive external opthamalplegia. To correlate biochemically quantifiable defects resulting from point mutations in Pol-γ with their physiological consequences, we created "humanized" yeast, replacing the yeast mtDNA polymerase (MIP1) with human Pol-γ. Despite differences in the replication and repair mechanism, we show that the human polymerase efficiently complements the yeast mip1 knockouts, suggesting common fundamental mechanisms of replication and conserved interactions between the human polymerase and other components of the replisome. We also examined the effects of four disease-related point mutations (S305R, H932Y, Y951N, and Y955C) and an exonuclease-deficient mutant (D198A/E200A). In haploid cells, each mutant results in rapid mtDNA depletion, increased mutation frequency, and mitochondrial dysfunction. Mutation frequencies measured in vivo equal those measured with purified enzyme in vitro. In heterozygous diploid cells, wild-type Pol-γ suppresses mutation-associated growth defects, but continuous growth eventually leads to aerobic respiration defects, reduced mtDNA content, and depolarized mitochondrial membranes. The severity of the Pol-γ mutant phenotype in heterozygous diploid humanized yeast correlates with the approximate age of disease onset and the severity of symptoms observed in humans.

Indexed as

Mutation, MissenseAmino Acid SubstitutionDiffuse Cerebral Sclerosis of SchilderDNA-Directed DNA PolymeraseDNA, FungalDNA, MitochondrialDNA Polymerase gammaDNA ReplicationHumansMembrane Potential, MitochondrialMitochondriaMitochondrial MembranesSaccharomyces cerevisiaeDNA-Directed DNA PolymeraseDNA, FungalDNA, MitochondrialDNA Polymerase gammaPOLG protein, humanDNA PolymeraseDNA ReplicationHuman MitochondriaMitochondrial DNANucleic Acid EnzymologyYeast

Identifiers

PMID24398692
PMCPMC3937665
OpenAlexW1980049569

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.