Evidence map›Paper›PMID 24398375›Full record

ArticleGenome biology and evolution2014

The plastid genome of mycoheterotrophic monocot Petrosavia stellaris exhibits both gene losses and multiple rearrangements.

Maria D Logacheva, Mikhail I Schelkunov, Maxim S Nuraliev, Tagir H Samigullin, Aleksey A Penin

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Article in Genome biology and evolution, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

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  7. PhytoKeys · 2022
    Article
  8. The Genomic Impact of Mycoheterotrophy in Orchids.Frontiers in plant science · 2021
    Article
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

5 authors.

Maria D LogachevaM.V. Lomonosov Moscow State University, Moscow, Russia.
Mikhail I Schelkunov
Maxim S Nuraliev
Tagir H Samigullin
Aleksey A Penin

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plastid genomes of nonphotosynthetic plants represent a perfect model for studying evolution under relaxed selection pressure. However, the information on their sequences is still limited. We sequenced and assembled plastid genome of Petrosavia stellaris, a rare mycoheterotrophic monocot plant. After orchids, Petrosavia represents only the second family of nonphotosynthetic monocots to have its plastid genome examined. Several unusual features were found: retention of the ATP synthase genes and rbcL gene; extensive gene order rearrangement despite a relative lack of repeat sequences; an unusually short inverted repeat region that excludes most of the rDNA operon; and a lack of evidence for accelerated sequence evolution. Plastome of photosynthetic relative of P. stellaris, Japonolirion osense, has standard gene order and does not have the predisposition to inversions. Thus, the rearrangements in the P. stellaris plastome are the most likely associated with transition to heterotrophic way of life.

Indexed as

Genome, PlastidGenomic Structural VariationChloroplast Proton-Translocating ATPasesGene DeletionMagnoliopsidaPhylogenyRepetitive Sequences, Nucleic AcidRibulose-Bisphosphate CarboxylaseSequence InversionChloroplast Proton-Translocating ATPasesRbcL protein, plastidRibulose-Bisphosphate Carboxylasegene lossgenome rearrangementsmycoheterotrophyPetrosavialesplastid genome

Identifiers

PMID24398375
PMCPMC3914687

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.