Evidence map›Paper›PMID 24398322›Full record

ArticleMolecular biology and evolution2014

Parallel histories of horizontal gene transfer facilitated extreme reduction of endosymbiont genomes in sap-feeding insects.

Daniel B Sloan, Atsushi Nakabachi, Stephen Richards, Jiaxin Qu, Shwetha Canchi Murali, Richard A Gibbs, Nancy A Moran

Open access · bronzeAbstract read
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Article in Molecular biology and evolution, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 120 papers.

0numbers the graph read from it
0cells of the map it votes in
120citing papers in PubMed
23.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

120 citing papers in PubMed, 200 citations in OpenAlex.

  1. Article
  2. Uncovering thousands of endosymbiont DNA transfer events within single cockroach genomes.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Time-resolved comparative genomics of 'Microbial genomics · 2026
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60 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Daniel B SloanDepartment of Biology, Colorado State University.
Atsushi Nakabachi
Stephen Richards
Jiaxin Qu
Shwetha Canchi Murali
Richard A Gibbs
Nancy A Moran
Baylor College of Medicine · USBaylor Genetics · USColorado State University · USThe University of Texas at Austin · USToyohashi University of Technology · JP

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
YALE BIOMEDICAL SUPERCOMPUTER: NEUROSCIENCES10RR019895 · NCRR · YALE UNIVERSITY · PI WILLIAMS, KENNETH ROBERT · 2004 to 2004
$1.6M
High Performance Computing Instrumentation for Yale University Biomedical HPC CenS10RR029676 · NCRR · YALE UNIVERSITY · PI BJORNSON, ROBERT DEAN · 2011 to 2011
$588k
Genomic Interactions between Psyllids and Their Obligately Intracellular BacteriaF32GM099334 · NIGMS · YALE UNIVERSITY · PI SLOAN, DANIEL BENJAMIN · 2011 to 2012
$96k
NCRR NIH HHS RR029676-01NCRR NIH HHS RR19895NCRR NIH HHS S10 RR019895NCRR NIH HHS S10 RR029676NHGRI NIH HHS U54 HG003273NIGMS NIH HHS 1F32GM099334NIGMS NIH HHS F32 GM099334
6 · The paper itself

Abstract

Bacteria confined to intracellular environments experience extensive genome reduction. In extreme cases, insect endosymbionts have evolved genomes that are so gene-poor that they blur the distinction between bacteria and endosymbiotically derived organelles such as mitochondria and plastids. To understand the host's role in this extreme gene loss, we analyzed gene content and expression in the nuclear genome of the psyllid Pachypsylla venusta, a sap-feeding insect that harbors an ancient endosymbiont (Carsonella) with one of the most reduced bacterial genomes ever identified. Carsonella retains many genes required for synthesis of essential amino acids that are scarce in plant sap, but most of these biosynthetic pathways have been disrupted by gene loss. Host genes that are upregulated in psyllid cells housing Carsonella appear to compensate for endosymbiont gene losses, resulting in highly integrated metabolic pathways that mirror those observed in other sap-feeding insects. The host contribution to these pathways is mediated by a combination of native eukaryotic genes and bacterial genes that were horizontally transferred from multiple donor lineages early in the evolution of psyllids, including one gene that appears to have been directly acquired from Carsonella. By comparing the psyllid genome to a recent analysis of mealybugs, we found that a remarkably similar set of functional pathways have been shaped by independent transfers of bacterial genes to the two hosts. These results show that horizontal gene transfer is an important and recurring mechanism driving coevolution between insects and their bacterial endosymbionts and highlight interesting similarities and contrasts with the evolutionary history of mitochondria and plastids.

Indexed as

Evolution, MolecularGene Transfer, HorizontalAnimalsGammaproteobacteriaGene ExpressionGenes, InsectGenome, BacterialHemipteraMetabolic Networks and PathwaysPhylogenyRNA, MessengerSequence Analysis, RNASymbiosisRNA, Messengeramino acid biosynthesisendosymbiontslateral gene transferPachypsylla venustapsyllids

Identifiers

PMID24398322
PMCPMC3969561
OpenAlexW2154486014

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.